GgaINT0073934 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56246113-56246878:+
Coord C1 exon
chr4:56246113-56246176
Coord A exon
chr4:56246177-56246803
Coord C2 exon
chr4:56246804-56246878
Length
627 bp
Sequences
Splice sites
5' ss Seq
CGGGTATAT
5' ss Score
4.36
3' ss Seq
ATATGTGAAATCTCTTACAGATT
3' ss Score
8.5
Exon sequences
Seq C1 exon
AGCAATGCTGATGACTGCTTGTGATTTATCAGCTATAACCAAACCGTGGCCAGTTCAGCAACGG
Seq A exon
GTATATCCTTAATTTTAAGGTTTCTTAAATATGAACTCTGCATAACTGCTTCTGCTTTCTCTATCCAACCTGTATTGCAAAGGCAAGGGTGGAACGTAGAACCTTAGCAAGCAGTCCTTCAAAATGCTAAATGTGGATTGAAGACATTCTCAGGTCTTGGCAGCAAAATCTATGCCTTTAGCTGTTACTAGTTACTGAAAGTAACCTGTTACTTTATCTGAAAGTATCTGTTACCTGTTACTGGTTATCTGAAAGTAAATCAGGAATCTCTGTTTTATTTTCCAGCATTTCTGTGTTACTACAAGGTGGCCAGTCCATACAGCACACTATCTAGTATCAGCTGACCTTTCTCTATGTGTTGATCATTCTAGCTGTTATCAATGGTAAGGCACTTTTGTGCCATTGTGCCTTACTTTGTCAGAGTAAATATCAGCACATGCAGGTGTCTCTTTTGTGAACAGATGTGTGTATCAATACATCTAAAAGCTAGCTGTTAAATGGGAGATTCTTATGGAGGTTGATCCCAATCTGGTATATCCTAAGAAGGCACAGGAAATTCAGAAAACAGTTTTGATCATAGGTAGCAAGCAAACTTTTATAGCTCTCAATATGTGAAATCTCTTACAG
Seq C2 exon
ATTGCTGAGCTTGTAGCTACTGAGTTCTTTGATCAGGGAGATAAAGAGCGGAAGGAACTCAACATAGAACCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]