BtaINT0109243 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108841307-108841704:+
Coord C1 exon
chr6:108841307-108841453
Coord A exon
chr6:108841454-108841560
Coord C2 exon
chr6:108841561-108841704
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GGGGTGACGTGCGCCTGCAGTCT
3' ss Score
3.85
Exon sequences
Seq C1 exon
GAGGGGCCTCTGGACGACTCTGGGTGGATCGTCAAGAACGTCCTCTCCATGCCCATCGTCAACAAGAAGGAGATCGTGGGGGTCGCGACATTTTACAACAGGAAGGACGGGAAGCCCTTCGATGAGCAGGATGAAGTCCTGATGGAG
Seq A exon
GTAAACACCTGTCACAGGCGGGGTTCCGGAGACGACCCCGGGGGGTGTGGGACCCAGGCCTGGGAGCTGGCCCCGAGGGCGCCCATGGGGGTGACGTGCGCCTGCAG
Seq C2 exon
TCTCTCACACAGTTCCTGGGCTGGTCGGTGCTGAACACTGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCCCAAGACATGGTCCTGTACCACGTGAGATGTGACAGAGAGGAAATCCAGCTGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480:ENSBTAT00000052174:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.1=100)
A:
NA
C2:
PF0159021=GAF=PD(5.1=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACGTCCTCTCCATGCC
R:
TCCTCTCTGTCACATCTCACGT
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]