BtaINT0110742 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112151721-112152109:-
Coord C1 exon
chr8:112152041-112152109
Coord A exon
chr8:112151842-112152040
Coord C2 exon
chr8:112151721-112151841
Length
199 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTCCGTGCACCCTTGCCCAGGGT
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGCAACCAGGGCCCAGAGTACATTGAGAGGCTGCCCCTGCGATG
Seq A exon
GTGAGAGGGTGGGGCTTGGCCCAGGCCCCTCCTGGCCCCTCTCAGTGTCTCCCCTCTGCGTCCCTCTGGGAACAGTTCTGCCTCCAGCCCCCAGGTCCCAGCCTTGCCCCCGCCCTTCAGCCTGGGTCCAGGGCGTTGCGACCCTGGCTGCTCAGGCTGCCGCCTCACGCCGGCCCCACCTCCGTGCACCCTTGCCCAG
Seq C2 exon
GGTCGATGTGGTTCACCTGGCCCTCTACAACCTGGGCGTGCAGAGCAAGAAGAAGTACTTCGACTTTGAGGAGATTCTGGCCTTCGTTAACCATCACTGGGAGCTCCTGCAGCTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTGTTCTTCTGCTCCGT
R:
CTTCCCAAGCTGCAGGAG
Band lengths:
188-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]