GgaINT0037225 @ galGal3
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14697106-14698055:-
Coord C1 exon
chr8:14697987-14698055
Coord A exon
chr8:14697230-14697986
Coord C2 exon
chr8:14697106-14697229
Length
757 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TATATATTTCTAAATTCTAGGGT
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTTTATACATTCATTTGCTCAGTTTGCAGTTCTGGACCAGAATACCTCAAACGTTTACCCTTGAGATG
Seq A exon
GTAAGTGCAATTAAAATAAGTAAATGAATGAATATATGTGCTGCTTTTCTCATTGGTATTTTGAGTTGCCTTGTTAAAAAGGAAGTTCACTTGCTGTCTTTTGTCATTGTTCTCTTTTGTCAAGAGTTCTTGTATGAACAGGGGCAGTTCTTCTATCAAAGTTTATTCATAAATGCATGTGTTTGCTTGGGATTTATTACTAGCATTGTTCAGTTAAGTTGCACCTAAGTACTCGCTTGTTGTCTATTTGAAGCTTGAGATACCCAAGCAGAATTCCTGTATTCAGGCTTTGTCTTATTATTAAGTGAAATGTGTTAAGTATAAGAGTAAACAGCTTGACTTGGTTTATAGTAGTTGACTTGATGAAATTTCATGTTGTAGTTTGAAGTACTTCAACTGCAGCTTGTATTAAAAAATAATGCCAGTTTAATGGCTTTATGTGCTGACAAGTGTAAGGTGAATTTTACCTTGCTAAATTTTAGTTCACCGGAATACTTACGTGAATTCAGAATTGTTTCGGATTTTAAAGGAGCATAATGAGAATGTGAGGTGAGGGAGAAATGCATGTGTGATACAAAGCAGCAGCGGCCACGTTAGGTAGAGGAATGATGGGAGGTAACATAATGTTTCCTGGATTGAGTGTTTTATGTTGTGCTTTATTTGTCTACCTACATTATGCTGATCTTGAAAAAAAAAAAAATCAAAGAAAAGCAATTGGGGATTTTTTTTGGTGATTTTATATATTTCTAAATTCTAG
Seq C2 exon
GGTAGATATAGCACATCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCGGAGCTTGAACTCATGGCGTACATAAATGAAAACTGGGATAGATTACATCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACATTCATTTGCTCAGTTTGCA
R:
CTCACCAGGATGTAATCTATCCCA
Band lengths:
190-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]