MmuINT0101700 @ mm10
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108093338-108094248:+
Coord C1 exon
chr5:108093338-108093406
Coord A exon
chr5:108093407-108094124
Coord C2 exon
chr5:108094125-108094248
Length
718 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TGATTATTTTTGGATTTCAGGGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCGTTACAGTG
Seq A exon
GTGAGCATGACCTGTTCTACTTTCTAAAAAGTGCCATAGCACATAAAACCTTCCATATGAAAATAAATAAAATTTTATTCTTTATACCTGGTTTTTAGTTCTTTTAGTAATCCTCAAGGCTTATACTGGCTTCAGGATTATCCATTTAACCATTATGGAAGGTTATAGAAACTACTCTTAGTTGTCTTTTATGCTCTTAAGTTTTTCTCTGTTTTCAGGTTTTTATGCCTTCAGAGTATTACATAAATTGACAGTTTTTGCTTCGATGTAGTAATAATTTATTAGATATTTTGGAGATCTAATAAAATGTGTATACTATGATGTTACAAATTTTTATTTGCCTTACATATTTAAGAACAGGAGATGCCTTAAATTGTGCTGATGGCACAGGCCCAGTAATATATGGTCTGCTTTGTGATTTCCTTACAGTGAAACACAAAGGTCTTGATTATAAATCACTTTCTCCTATAGCCAGGTTTTTAAAAAATGCATTTAGGAAGTAATTTAGGTATGTTTTAGTTTATAATTATTCCTGATAAGTTAAGCTAGTGGTTTCCAGTTTCTTCATATGTATCAGTTTATTGTTTTATGACTATGATTTAAATTACTGACCACCTATCCACCTAAGAATGTCATTTTGGTTGTATTATACTACAATAATAATCAAACAATAATCAAAAAACAGTTTTCATCTATTTTGATTATTTTTGGATTTCAG
Seq C2 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267:ENSMUST00000081567:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACATTTATTTGCTCTGTCTGCA
R:
CTCTCCAGGGTGCAATCTATCC
Band lengths:
190-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types