HsaINT0105979 @ hg38
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29535]
Coordinates
chr1:93119333-93120672:+
Coord C1 exon
chr1:93119333-93119401
Coord A exon
chr1:93119402-93120548
Coord C2 exon
chr1:93120549-93120672
Length
1147 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATTATTTTCGGATTCCAGGGT
3' ss Score
6.38
Exon sequences
Seq C1 exon
ATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGTG
Seq A exon
GTAAGTGTGGACCTTTCTGTTAAAAGAAAGAAAAGCCATTTTCTTAAACCTACAAGTTGAAACTTTCTATATACATTTACTTGGCTTAAGTAAAAATAGGTTATTTATGCTTGGCTTTATTTCTTTTATTTATCCTCATGCCTGATGTCATCTTCACTAAGTAACATCCACTTGTATTGCTAAATTAATAAGGCTGTTCAGTGTTGAATGTTATAAATGAAACTTTCAGATATCCTTTAGACCTAAATTCTTACTCATATTTCTAGTTCTTTTGAACATTCAGAATACCATACAGTAGAAGAGAGATAGGTATAACAAATATGCTAATTTCTGCTTCAATGTAGTAATTCTTGTGTGTTGGAAGTGTGATGAATTTTAGAGGTTTACTAATAAAATGCTTACAGTAAGTACTTACAAATCTTTGTTGTATTTTACATATTTTATCAACAGATAGGATTTAACCCATGAATCAAATAGTTTGGTTAAGTATGGTATATTCTGTAGCTTATATCCGGAAGTGAAAACACAAAAATCTTGATTTTAAGTTATATTTTTTTAAAGCCAGACCCTCTTTGAATGCACTTGAAGAAGTAATTTGTGGCCAGGTGCGGTGGCTTTCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCTCCTGAGGTCTGGAGTTTAAGACCAGCCTGGCCAACACGGTGAAACCACGTTTCTACTAAAAATACAAAAAAATTTAGCCTAGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCACGGGGCGGAAGTTGCAGTGAGCTGACGTTGTGCCATTGTACTACTCCAGCCTGGGCAATCAGCGAAACTCTGTCTCCAAGAAAAAAAAAAAAAAAAAAAAGAAGTAATTCATATATCTTCTAGTTTATAGTTGCTATTCAGAATAAGTGAATGTTTAGTCACTATTTTCTAGTTATTTTTATGTGTAGTGATTTATTGTATTGTGAATATGACTATCCACCTAAATATTTCTCTTTGCATTTTAATTACTGTTTTATAAGGAAACCGTGATTTTTTAACAGTAACCAAAAACATTGTTTTGTGTATTTGATTATTTTCGGATTCCAG
Seq C2 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033:ENST00000370298:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACGTTTATATGCTCTGTCTGCA
R:
CTCTCCAGGGTGCAATCTATCC
Band lengths:
190-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development