RnoINT0095108 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2675513-2676581:-
Coord C1 exon
chr14:2676513-2676581
Coord A exon
chr14:2675637-2676512
Coord C2 exon
chr14:2675513-2675636
Length
876 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TGATTATTTTTGGATTCCAGGGT
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGTG
Seq A exon
GTAAGCATGAACTGCTATATGTTTTTCCTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGAGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAACCCCCAACCCCCAAACTGCTATATGTTTTAAAGAGTGCACATTACATGAAACTTTCCATAGGAAATGTAAATGAACTGTGGTTCTCTATGCCTGGTTTTATTTCTTATAGTAATCCCCAAGGCTTATGTTGACTCCAGGGCTGTGCATTCTGTCGTTGTTAGTAAGGCTGCTCATTATGGGTGGTTATAGAGACTACTCTCAGCTGTCTTTATGCTCTTAAGTTTTTCTGCTTTCAGCTTTTTGTGCCTTAGGGGACCACATAAAATAAAATGACAATTTCTGCTTTGGAATGGTAATAATTTATTGGATATAAGAATTTTGGAGATATAATAAAATGTGTATACTATGATTTTACAAATTTTTATTTGCTTTACATACTTAAGAACAGTATGTACCTGTACTAACTTGTACCTGTGGCCGAGGCCCAATAATGTGCACTCTGCTTTGTGGTCCCTTACCGTGAGACACCAAGGGCTTAATAATAAATAAATTGTTTCCTACCATAGCCAGATCTTCTTAAAATAAGTTTAGGAAGTAATTGGGGTAGGTTTTCATTTATAATGATTCCAGATAAGTTAAGCTAGTGTTTTCTGGTTTCGTCATGTGTATCAGTTTATCGTATTATGACTGTGATTTAAGTATTGAGCACCTGTCCACCTAAGTGTGTCACTTTGGTTGTATTACACTAGTTTTATAAAGAAACTGATTTCTTAACAATAACAAAAATCAGTTTTCGTGTATTTGATTATTTTTGGATTCCAG
Seq C2 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAGTACTTTGACTCTGAACTTGAGCTTATGACATACATTAATGACAACTGGGACAGATTGCACCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACATTTATTTGCTCTGTCTGCA
R:
CTCTCCAGGGTGCAATCTGTC
Band lengths:
190-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]