HsaINT0105979 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93584890-93586229:+
Coord C1 exon
chr1:93584890-93584958
Coord A exon
chr1:93584959-93586105
Coord C2 exon
chr1:93586106-93586229
Length
1147 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATTATTTTCGGATTCCAGGGT
3' ss Score
6.38
Exon sequences
Seq C1 exon
ATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGTG
Seq A exon
GTAAGTGTGGACCTTTCTGTTAAAAGAAAGAAAAGCCATTTTCTTAAACCTACAAGTTGAAACTTTCTATATACATTTACTTGGCTTAAGTAAAAATAGGTTATTTATGCTTGGCTTTATTTCTTTTATTTATCCTCATGCCTGATGTCATCTTCACTAAGTAACATCCACTTGTATTGCTAAATTAATAAGGCTGTTCAGTGTTGAATGTTATAAATGAAACTTTCAGATATCCTTTAGACCTAAATTCTTACTCATATTTCTAGTTCTTTTGAACATTCAGAATACCATACAGTAGAAGAGAGATAGGTATAACAAATATGCTAATTTCTGCTTCAATGTAGTAATTCTTGTGTGTTGGAAGTGTGATGAATTTTAGAGGTTTACTAATAAAATGCTTACAGTAAGTACTTACAAATCTTTGTTGTATTTTACATATTTTATCAACAGATAGGATTTAACCCATGAATCAAATAGTTTGGTTAAGTATGGTATATTCTGTAGCTTATATCCGGAAGTGAAAACACAAAAATCTTGATTTTAAGTTATATTTTTTTAAAGCCAGACCCTCTTTGAATGCACTTGAAGAAGTAATTTGTGGCCAGGTGCGGTGGCTTTCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCTCCTGAGGTCTGGAGTTTAAGACCAGCCTGGCCAACACGGTGAAACCACGTTTCTACTAAAAATACAAAAAAATTTAGCCTAGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCACGGGGCGGAAGTTGCAGTGAGCTGACGTTGTGCCATTGTACTACTCCAGCCTGGGCAATCAGCGAAACTCTGTCTCCAAGAAAAAAAAAAAAAAAAAAAAGAAGTAATTCATATATCTTCTAGTTTATAGTTGCTATTCAGAATAAGTGAATGTTTAGTCACTATTTTCTAGTTATTTTTATGTGTAGTGATTTATTGTATTGTGAATATGACTATCCACCTAAATATTTCTCTTTGCATTTTAATTACTGTTTTATAAGGAAACCGTGATTTTTTAACAGTAACCAAAAACATTGTTTTGTGTATTTGATTATTTTCGGATTCCAG
Seq C2 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_001164392:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACGTTTATATGCTCTGTCTGCA
R:
CTCTCCAGGGTGCAATCTATCC
Band lengths:
190-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)