BtaINT0095843 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50505609-50506601:-
Coord C1 exon
chr3:50506533-50506601
Coord A exon
chr3:50505733-50506532
Coord C2 exon
chr3:50505609-50505732
Length
800 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TGATTATTTTTGGATTCCAGGGT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ATTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAATG
Seq A exon
GTAAGTATGGACCTTTCTATTAAGGAGCAAAAGAAGAATTGTGTTTTAAATCTACAGGATGAAACTTTTCTATATACATTTACTTAGCTTAAAGAAAAATTTGTTCTTTATGCCTAGTTTTCTTTCTTTTCCTTTATTTATCCTCAAGCCTGATGTTATCTTTCCCAAAGGTTATCTAGTTTTATTGCTAACATAATAAGGCCATTCAGTTTCTAATGGCATAAAAAGTAACTTTGAAATATCTTTTAGATCTTCAAAATTCTTATTCATGTTTCTAGTTCTTTTGGGCCTTCAGAATACGGTAGAAGAGAGAAAGGTCTTATAATATGCCAGTTTCTGCTTCAGTTAAGTAATCCTTGGGCATGGGAAGTATGATGAATTTTGGAGATTTACTGAAAATGCTTATAGTAAGTACTTAGATGTTTTTGTTAAATGTTTTACATATTTTAGGAAAAGATAGGATTTCATTAATGAATCAGATAAAATCTGTTAAAGTGTGATCCATTTTATAGCTTATGTAGTAGTGAAAACATGAAATTTTAGATCATAAATTACTTTTAAACATCAGATTCTCTTTTAAGAAATCAAATATCTTAAATTTTAGTTATTACTCAGGATAAATTAATGTTTTTCATTTATTTTCATATAATGATTTATTGTGAATATGACATGATATTAACCATCTGTTCATCTAAAAACTTTGGATTTTTTTAATAGCTGGTTTTATAATAATAATGTGTGATTTAAAAATAATAACCAAAACATTATTTTCATATTATTTGATTATTTTTGGATTCCAG
Seq C2 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACATTTATTTGCTCTGTCTGCA
R:
CTCTCCAGGGTGCAATCTATCC
Band lengths:
190-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]