RnoINT0110362 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13966636-13966956:-
Coord C1 exon
chr3:13966888-13966956
Coord A exon
chr3:13966757-13966887
Coord C2 exon
chr3:13966636-13966756
Length
131 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GCCCTTGCTTTCTTACCCAGGGT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGTAACCAAGGCCCAGAGTATATCGAGAGGTTGCCCCTGAGATG
Seq A exon
GTGAGAAGATGGAACCTGTCCCTACCAGCTCTTCCTGTCCCCTCTGCCCTCTGCCCCCTGCCCCCTGCCCTCTGCCTTCTGCCCTCTGCCCTCTGCCCTGACCCTCACTTGGCCCTTGCTTTCTTACCCAG
Seq C2 exon
GGTAGACATAGTTCACCTGGCCCTCTATAACCTGGGAGTACAGAGCAAGAAGAGGTACTTCGACTTTGAGGAGATCCTGGCCTTTGTCAACCACCACTGGGAGCTCCTGCAGCTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTGTTCTTCTGCTCCGT
R:
CTTGCCAAGCTGCAGGAG
Band lengths:
188-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]