BtaINT0111677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2004718-2005655:-
Coord C1 exon
chr16:2005561-2005655
Coord A exon
chr16:2004899-2005560
Coord C2 exon
chr16:2004718-2004898
Length
662 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
CGCTTCCCTTTGCCGGATAGGTT
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCCTTAAAGTATGAATGCTACCTGGACAGCCCCTTGGTGCGCTTCCTCCTGAAGCGAGCGGTCTCTGACTTGAGAGTGACTCACTACTTCTTCTG
Seq A exon
GTAAAACTGTGCAGAAAGGGGAGAGGTAGACTTGTCTCCCTCACTTGGGAGTACTTTACTTTCAACCTGCAGGGTAGGGGCTTCCTGGGTGGCGCTAGTGGTAAAGAACCCGCCTGCCAGTGCAGGAGACAAAAGAGACGCAGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACGTAGGAGCCTGGCGGGCTGCAGTCCGAGGGTTTGCAAAGAGTCGGACACCACTGAAATGATTTAGCACTGCCAGGTGGGGAGCTGAGCCATCTGGGTTGCAGTATTTGGGCCAGCACCTTTTCCTCAGGGGGGTCTCAGCCCACCCCTATGGTAAGCAGAGTGGGATCATCCCTGGCCCTCCCCTCCACCCTCATGTGGCAGAAATATAAAGGAGAAACCAGATGCATGAGGCCTTTGAGCTCTACTTAAAAACAGCATGGGCAAGCTGAGAAGTGGATGAACACCTCTGTATCAGTTTTACACCCAGAGTCTGTTTTCCTTCCCAAATTTGGGGTGGGTTTTCCAGGGAGTTGGAGCTGGGCCTGGCCGTTCCCCAGCCCCCTTGCCTGTGGTCCCTTGGGTGTTCTGATTGCCGCGCTTCCCTTTGCCGGATAG
Seq C2 exon
GTTGCTGAAGGACGGCCTCAAAGACTCTCAGTTCAGCATCCGCTACCAGTACCTGCTGGCCGCCTTGTTGTGTTGCTGTGGCAAGGGGCTGAGAGAGGAGTTTAACCGCCAGTGCTGGCTTGTTAATACCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCTGCCCCGTCTGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
NA
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAAAGTATGAATGCTACCTGGA
R:
GACCTGCTGGGCCAGTTTG
Band lengths:
249-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development