RnoINT0111270 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49893404-49894085:+
Coord C1 exon
chr13:49893404-49893498
Coord A exon
chr13:49893499-49893904
Coord C2 exon
chr13:49893905-49894085
Length
406 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
CCGCTTGCCCTGCCTTGCAGGTT
3' ss Score
10.36
Exon sequences
Seq C1 exon
GCCCTGAAGTACGAGTGCTACCTGGATAGCCCCTTGGTGCGCTTTCTCCTGAAGCGAGCCATCTCCGACCTGCGAGTGACCCACTACTTTTTCTG
Seq A exon
GTAAATTCACGGCAAGAAAGGTGGTAGGCAGGGTCCTTAGGCCAAGACTGTCTTCCCTAGAGCAGGCCAGAGTGAGGAGATAAGAGAACAGGCTCCAATATGCTGCTGATCTACCCTGTGGCTTTGGTCTGGTATCTTTCCTCAGGGCAGGTCTCAGCTCACCCCCATATAACTCTGGGATTATCACCTATATCCCCCTGCCCTACCCACCCATGGTGGAAATATAAAGGTAAGGTGAGCTGTAGAGGGGCTTCCGCTCAAAGACAGGGTAGATATTCAAACTATGTTTTCCCCTGAAGCATGGGGGAGAGGGCTTTCTGAATAGAGGTAGGAGATAGCCCTTTGTTCCCTAGCTCGATGCCATGGCTAGTGAGTAGTCTGATGACCCGCTTGCCCTGCCTTGCAG
Seq C2 exon
GTTACTGAAGGACAGCCTCAAGGACTCCCAGTTCAGCATCCGTTACCAATACCTGCTAGCGGCCCTGCTGTGCTGCTGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAATACCCTGGCCAAACTGGCCCAGCAGGTCCGAGAGGCCACCCCATCTGCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
NA
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGAAGTACGAGTGCTAC
R:
TGCAGATGGGGTGGCCTC
Band lengths:
270-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]