GgaINT0141665 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1589100-1589453:-
Coord C1 exon
chr26:1589359-1589453
Coord A exon
chr26:1589281-1589358
Coord C2 exon
chr26:1589100-1589280
Length
78 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATGCTTGTGCTGCGGGCAGGCT
3' ss Score
5.75
Exon sequences
Seq C1 exon
GCCTTGAAGTATGAGTGCTACCTGGACAGCCCACTGGTGCGCTTCCTCATGAAGCGAGCAATCTGCGACCTGAAAATCACCCACTATTTCTTCTG
Seq A exon
GTGAGTCTTAGGGGACCAAGAGGGGGCTGGGGGGGCTCCAGGACGTGCCTGACCCCACCATGCTTGTGCTGCGGGCAG
Seq C2 exon
GCTGCTGAAGGATGGCCTGAAGGACTCCCAGTTCAGCATCCGCTACCAGTACCTGTTGGCAGCTCTGCTGTGCTGCTGTGGGAAGGGGCTGCGGGAGGAGTTTGACCGGCAGTGCCTGCTGGTCAACACGTTGGCCAGGCTGGCCCAGCAAGTGAGGGACGCCGCGCCATCCGCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
NA
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACCTGAAAATCACCCA
R:
CCAACGTGTTGACCAGCAGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]