BtaINT0111689 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1989263-1990572:-
Coord C1 exon
chr16:1990448-1990572
Coord A exon
chr16:1989381-1990447
Coord C2 exon
chr16:1989263-1989380
Length
1067 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATCTTTTCACCGGCCGCCAGCTT
3' ss Score
4.19
Exon sequences
Seq C1 exon
ATTTACGTGGTAAAGGTGATGCGAGAGAATGCTCACGAGGCCGCTTACATCCAGCGGACATTTGAGGAGTTCCAGGAGTTACACAATAAGCTACGGCTGCTCTTCCCTTCTTCCCTCTTGCCCAG
Seq A exon
GTACGTGCTCCGCCTGCTCTCTGCACTGCGGGGTAGCGGGGAGGGCAGCCGGGGGCTGGGCAGCACGGCCCTTGGGAGTCAAGACCTGCGTCCTCGGTTTTCTTAACTGGCCATGTGTGATGACAAGCGCTCCCCCTGCTGGCCATGCGCTTCTGAGGCTCTCAAGTGGTCTTCCTCCAGCCTCAAAAACAAGCCTGGGCGCACCTGCCAGGGCAGCTGCTGCTGCTGCTGCTAAGTTGCTTCAGTAGTGTCCGACTCTGTGCGACCCCGTAGATGGCGGCCCAACAGGCTCCCCCGTCCCTGGGATTCTCCAGGCCAGGACAGCAAACTGGGTCTAAAGGCAGGGGATTGTTGGCGTCTGAAGATGTTTTGAAGTGTCTAATCTTCTAAAGAATAAAAGTGTTTTTGAAATATATAAAGAAAATGTGGTGTATATACAAAATGGAATATTACTATACTGCATGATTCCACTTATATGAAGTACCTAGAGTAGTCACATTCATAAAAACAGCAAGTAGAATGGGGGTTGCCAGGGGGAGGGAGCAAACGGGGAGCTGCTTAATAGGTACAGAGCTTCAGTTTCGCAAGAGGAAAAGGACTGGAGAGGGATGGTGATCATGGTTACATCACAGTGTGAGTGTGCATAACTCTGAACTGTACACTTACAAATGGGTAAGACAGTAAATTTTACGTTAGATGAGTTTTACAACAATTTTAAGGAGCAGATTTTCAAATAGAATTTGTACCATGATGAGGAAAACTGGAGGCTCCAGAGTTGCCTGAGCACTTCTGGGCAGCTGTAGTGCTCTGCTCAGCACTTTGGTTTTCTTTTCTGTGGTCCGTGGAATTGTCCAGTGGGAGATGCTGCGCATGCGTCCTCGGCACAGACCTGGGTAGCCGGGGGAGGCATGGAGTAGGGGAGAGGTCCCTGGGGAGGGAGGCCAGGGAGAAATGCGGATCAGGTGGCTGAAAATGAAAGTGGAATGGAAAAAAAAAAGAAAAAAGAAAGTGGAATGGGACTAAAGGCTATTGCTTCCTTTTTTCACCATCTTTTCACCGGCCGCCAG
Seq C2 exon
CTTCCCCAGTCGCTTCGTGATTGGCCGCTCGCGAGGAGAGGCAGGGGCCGAGCGGCGCCGGGAGGAGCTAAACGGATACATCTGGCACTTGGTCCACGCGGCCCCGGAGGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
NA
C2:
PF0078719=PX=FE(34.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACGTGGTAAAGGTGATGCGA
R:
CGTGGACCAAGTGCCAGATG
Band lengths:
222-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development