HsaINT0124965 @ hg38
Intron Retention
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204429921-204431793:-
Coord C1 exon
chr1:204431669-204431793
Coord A exon
chr1:204430039-204431668
Coord C2 exon
chr1:204429921-204430038
Length
1630 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TGCCTACGCTGCCACGCCAGCTT
3' ss Score
1.92
Exon sequences
Seq C1 exon
ATATATGTGGTAAAGGTGATGCGAGAGAACACTCACGAGGCCACCTACATCCAGCGGACCTTTGAGGAGTTCCAGGAATTACACAATAAGTTGCGGCTGCTCTTCCCTTCTTCCCACTTGCCCAG
Seq A exon
GTAGCTGCCCCCTTTACTATCTGCACAGAGGGATGTCGGGGAGGGGGAAAGGATACGGGATGGGAGGTGGTCAGGGCTGCAGGGGCAGAAAATACCCTTTTGGACTAAACATCTGCCTGCTTTGCTTGGCCTGGTATGGAGTTTGATGACAAGTGCTCCCCCTGCTGGCCAAGCTCTCCTTGCACGCAAGAGCTCTCACTCCAGGCCCACTGGCCAGAAAGGAAGGCATGGTTGAATCTGATGTTTCAAAATTTCTAATTTTTTAAAGAGTTACACCATTTTTCAAATGGATAAGCAAAATGTCATATGTACATACAGTGGGATATTATTCAGCATTTAAAATGGAGGGAGATTTCGACACGGGTAACAACGTGGATGGACCTTGAGGACATTCTGCTAAGTGAAATAAGCCAGTCACAAAAAAACAAAAACGGCACGATTCCACTTATCTGAGTTACCTGGAGTAGTCAGACTCCTAGAGGCAGAAAGTAGAAAGCTAGTTGCCCAGGTCTGAGGGGAGGTAGGTGTGGTTGTTTAATGGGTACAGAGCTTCAGTTTTGCAAGATGAAAAGAGCTATGAAGTTGGATAGTGGCGATGGTTGCATGACAGTGTGAATATGGTTAATTCCACAGAACTGTACACTTAAAAATGGTTAAGATGGCAAATTTTATGTTACACATATTTTACTGCAATTTTTTTAAAAACTACTTTTCAGGCCGGGCGCAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGTGGGCAGATTGCCTGAGGTCAGGAGTTCGAGAGCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGTGTGGTGGCATGCTTTTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGTGACTGCGCTCCAGCCTGGGCGGCAAAGCGAGACTCAGTCTCAAAACAAACAAACAACTTTTTAAATGAATTTTTTGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGCAGGCTGAGGCAGGCAGATCATGAGCTAAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCCCTCTACTAAAAATACAAAAATTAGCTGGGTGCGGTGGTGTGTGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGTGGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGTACTCCCGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAGGATTTTTACATCGATGGGAGAAACTGAGGGCTCCCGAGCCATTTCTGGGGAGCCACAGGACTCTGGCCTGCTGTTTGGTTTTCTTGTCTGGGGCCCTTGGAAATGTAGTCATGAGATGCTGAGCAGGTGTCAGACCTGGGCACAGATGTGCAGCACAGGAGGAATTGTGAGGGTCCCTAGAAATGGAGGCTGCTGGGAAATGGGTGCTAGGGGACTGGAAACGCAAATGAAATGTGAAAAAAGCCCATTGTGTCCATTTTCTTTCCCCATCTTCACCTCCTGCATCCCCGCTGCCTACGCTGCCACGCCAG
Seq C2 exon
CTTCCCTAGTCGCTTCGTGATCGGCCGCTCCCGGGGAGAGGCGGTGGCCGAGCGGCGGAGGGAGGAGCTAAACGGTTACATCTGGCACTTGATCCACGCACCCCCTGAGGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056:ENST00000367187:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
NA
C2:
PF0078719=PX=FE(34.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTAAAGGTGATGCGAGA
R:
CTCAGGGGGTGCGTGGATC
Band lengths:
230-1860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development