GgaINT0141675 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1586554-1586866:-
Coord C1 exon
chr26:1586742-1586866
Coord A exon
chr26:1586672-1586741
Coord C2 exon
chr26:1586554-1586671
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GTGTCTGTGCCCTTTGACAGCTT
3' ss Score
8.42
Exon sequences
Seq C1 exon
ACCTACGTGGTGAAGGTGAAACGGGAGAGCCCGAGCGAGGTGACCTTTGTGCAGCGCACCTTTGAGGAGTTCCAGGAGTTGCACAACAAGCTGCGCCTGCTCTTCCCCTCCTCGCTGCTGCCCAG
Seq A exon
GTACCCCCAGACCTGGCACCAGGCTTTGCAATGCCCTGCAGGGTCGCTGAGTGTCTGTGCCCTTTGACAG
Seq C2 exon
CTTCCCCAGCAGGTTCATTATCGGCCGGTCACGAGGAGAGGCGGTGGCTGAAAGGAGGAAAGAAGAACTCAATGGTTACATCTGGCACCTCATCCATGCTGCCCCCGAGGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.6=100)
A:
NA
C2:
PF0078719=PX=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAAGGTGAAACGGGAG
R:
CTTTCCTCCTTTCAGCCACCG
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]