HsaEX0047525 @ hg38
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204428139-204432401:-
Coord C1 exon
chr1:204432200-204432401
Coord A exon
chr1:204431669-204431793
Coord C2 exon
chr1:204428139-204428220
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAAGATCTGGACCTTTGCAGATA
3' ss Score
5.75
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTTGATTGAGTCCAGCCTGGGCAGTGTAGCCACAAAGCTCAATTTTTTCATCCATAATCTGGCTCAGATGAAGTTCACGGGCTCAGATGACCGGCTGACCCTCTCCTTTGCCTCCCGAACACACACTCTCAAGAGCTCTGGCCGAATCAGTGATGTTTTCCTCTGCCGCCATGAGAAGATCTTCCACCCCAACAAAGGCTAT
Seq A exon
ATATATGTGGTAAAGGTGATGCGAGAGAACACTCACGAGGCCACCTACATCCAGCGGACCTTTGAGGAGTTCCAGGAATTACACAATAAGTTGCGGCTGCTCTTCCCTTCTTCCCACTTGCCCAG
Seq C2 exon
TGTGATTTGGTGTACACCTTCTTCCACCCACTGCCCCGGGATGAGAAGGCTATGGGCACCAGCCCAGCTCCTAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056_MULTIEX3-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=29.4)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=PD(8.8=35.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTAGCCACAAAGCTCA
R:
TGGTGCCCATAGCCTTCTCAT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development