DreEX0055534 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23360980-23361897:-
Coord C1 exon
chr11:23361696-23361897
Coord A exon
chr11:23361481-23361608
Coord C2 exon
chr11:23360980-23361097
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACATTCACCCTTTCATGCAGTCT
3' ss Score
6.1
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTAATTGAGTCCAGTCTTGGCAGTGTGGCTACTAAGCTCAACTTCTTCATCCATAATCTTGCCCAAATGAAATTTGCGTCCTCTGAAGAGCGTCCTGTTCTGTCATTTGCACCACGCGTCTACACAATGAAGACTGACGGTGTGATTCGCAGCCTGTTTGTTTGCAGGCACATCAAAACCTATTCTCCAAGCAAAGGCTAC
Seq A exon
TCTTATGTTGTAAAAGTGGAGCGGGAAGGTCAGCAGGGCTCACCAACATTGGTCCAGAGGACATTTGAGGAGTTTAATGAACTTCATAGTAAACTGCAGCTCATCTTCCCTTCCTCAAAACTACCAAG
Seq C2 exon
CTTCCCCAGCCGCTTTGTGATTGGTCGCTCTCGAGGGGAGGCCCTGGCAGACAGGAGGAAAGATGAGCTAAATGGATATGTTTGGCATTTGATACATGCTGCTCAAGAGGTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'36-34,'36-33,37-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.5=29.4)
A:
PF0078719=PX=FE(36.8=100)
C2:
PF0078719=PX=FE(34.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCGTCCTCTGAAGAGCG
R:
CCACCTCTTGAGCAGCATGTA
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]