BtaEX6067421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1989263-1991218:-
Coord C1 exon
chr16:1991017-1991218
Coord A exon
chr16:1990448-1990572
Coord C2 exon
chr16:1989263-1989380
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTAAGATTTGGGCTTTGCAGATT
3' ss Score
5.06
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTGATCGAGTCCAGCCTTGGCAGTGTAGCCACAAAGCTCAATTTTTTTATTCATAACCTGGCTCAGATGAAGTTTTTAGGCTCAGATGATCGGCTGACCCTCTCCTTTGCTCCACGAACACACACTCTCAAGAGCTCAGGCCGCATAAGCGATGTGTTTCTCTGTCGCCACGAGAAGGTCTTCCACCCCAACAAGGGCTAT
Seq A exon
ATTTACGTGGTAAAGGTGATGCGAGAGAATGCTCACGAGGCCGCTTACATCCAGCGGACATTTGAGGAGTTCCAGGAGTTACACAATAAGCTACGGCTGCTCTTCCCTTCTTCCCTCTTGCCCAG
Seq C2 exon
CTTCCCCAGTCGCTTCGTGATTGGCCGCTCGCGAGGAGAGGCAGGGGCCGAGCGGCGCCGGGAGGAGCTAAACGGATACATCTGGCACTTGGTCCACGCGGCCCCGGAGGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=29.4)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTAGCCACAAAGCTCA
R:
TCCGTTTAGCTCCTCCCGG
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]