GgaEX1043803 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1586554-1587219:-
Coord C1 exon
chr26:1587018-1587219
Coord A exon
chr26:1586742-1586866
Coord C2 exon
chr26:1586554-1586671
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACAGCCCCATCTCCCCGCAGACC
3' ss Score
11.21
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTGATCGAGTCCAGCTTGGGCAGCGTGGCCACCAAGCTCAACTTCTTCATCCACAACCTGGCGCAGATGAAGTTCACGGGCTCTGATGCCCGCCCAACCCTCTCCTTTGCCCCTCGCACACACACCATCAAGACGTCCGGCCGGATCTGTGATGTCTTCCTCTGCCGCCATGAGAGGGTCTTCAACCCCAGCAAGGGCTAC
Seq A exon
ACCTACGTGGTGAAGGTGAAACGGGAGAGCCCGAGCGAGGTGACCTTTGTGCAGCGCACCTTTGAGGAGTTCCAGGAGTTGCACAACAAGCTGCGCCTGCTCTTCCCCTCCTCGCTGCTGCCCAG
Seq C2 exon
CTTCCCCAGCAGGTTCATTATCGGCCGGTCACGAGGAGAGGCGGTGGCTGAAAGGAGGAAAGAAGAACTCAATGGTTACATCTGGCACCTCATCCATGCTGCCCCCGAGGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.0=27.9)
A:
PF0078719=PX=FE(36.6=100)
C2:
PF0078719=PX=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCATCCACAACCTGGCG
R:
GCATGGATGAGGTGCCAGATG
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]