RnoEX0065949 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49903400-49905006:+
Coord C1 exon
chr13:49903400-49903601
Coord A exon
chr13:49903992-49904116
Coord C2 exon
chr13:49904889-49905006
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGAGTTTGGCCTTTGCAGATC
3' ss Score
7.65
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTTGATTGAGTCCAGCTTGGGCAGCGTAGCTACGAAACTCAACTTTTTCATCCACAACCTGGCTCAGATGAAGTTCACAGGCTCAGACGACCGGCTCACCCTCTCCTTTGCCCCCCGAACACATACTCTCAAGAGCTCTGGCCGCATCCGTGATGTCTTTCTCTGCCGACATGAGAAGGTCTTCCACCCTAGCAAGGGCTAT
Seq A exon
ATCTATGTGGTGAAGGTGATGCGAGAGAACGCTCACGAGGCAACCTACATCCAGAGGACGTTCGAGGAGTTCCAGGAACTGCACAATAAGCTGCGCCTGCTCTTCCCTTCCTCCTTCCTGCCCAG
Seq C2 exon
CTTCCCTAGTCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGCGGAAGGAGGAGCTAAATGGCTACATCTGGCACTTGATTCATGCAGCCCCTGAAGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'42-40,'42-38,43-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=29.4)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAACCTGGCTCAGATGA
R:
AGGGGCTGCATGAATCAAGTG
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]