Special

DmeEX6016197 @ dm6

Exon Skipping

Gene
FBgn0015278 | Pi3K68D
Description
The gene Phosphatidylinositol 3-kinase 68D is referred to in FlyBase by the symbol DmelPi3K68D (CG11621, FBgn0015278). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (2 unique). Gene sequence location is 3L:11774650..11790013. Its molecular function is described by 9 unique terms, many of which group under: transferase activity, transferring phosphorus-containing groups; transferase activity; binding; protein binding; phosphatidylinositol kinase activity. It is involved in the biological process described with 7 unique terms, many of which group under: cellular process; organophosphate metabolic process; cell communication; primary metabolic process; biosynthetic process. 25 alleles are reported. The phenotypes of these alleles manifest in: endomembrane system; intracellular vesicle; sensillum campaniformium; bristle of mesothoracic tergum; neuromuscular junction. The phenotypic classes of alleles include: increased mortality during development; phenotype; increased mortality; visible. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
Coordinates
chr3L:11776330-11781328:-
Coord C1 exon
chr3L:11780936-11781328
Coord A exon
chr3L:11780678-11780878
Coord C2 exon
chr3L:11776330-11776526
Length
201 bp
Sequences
Splice sites
3' ss Seq
ACAAATGTCTCCGGTTTCAGAAT
3' ss Score
8.2
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGATCGCACTCCATTTGTCCTGACTTCCGACATGGCTTATGTCATAAATGGCGGCGATAAGCCCTCCACAGACTTTCACTATTTCGTGGACCTATGTTGTCGAGCCTTTAATATCGTGCGGAAAAATGCTGATCTACTCTTGCACACCCTGGCCCACATGGCTACAGCAGGCATGCCGGGAGTAAACTCCAATGCTGTGCAATATGTACGACGCGCCCTATTGCCATCTCAATCGAATCCCGAGGCAGCTGCCACATTTGCCAAGATGATTCAATCCTCTTTGAAAAGCTGGTTCACGCAATTCAATTTCTTTCTGCACAATCTGGCCCAGATGCGTTTCACCCCAGACGAGGGATCAGGAGAGCTGCTATCGTTCGTGCCACGAAAATATAC
Seq A exon
AATGCAGCAGGATGGTCGCTTGAAGATTGTAAAGGTGGTGTGTTTCCAGAAGCATTACAGCATGGAAAAGTTTTATATGTATATTCTGGAAGTGACGCGACATGGACAGCCCGATCCGACACATTTGTTCCGGTCATATCGGGAATTCACGGAATTCCATCAGAAGTTATGCATGCACTTTCCTTTGGTTAAACTGCACAG
Seq C2 exon
TCTGCCGGCTGGTGTGCATGTGGGCCGTTCCAATATCAAATCCGTGGCAGAAAAACGACTACCTCTTATTCAGCGATTTTTGAAATCGTTGTTCGATGCGTCCGAGGAAATAGCCCATTCCGAGCTCGTTTACACATTCTTTCACCCGCTGCTGCGCGATCAGCAGGAAGCCAAGCTTGGGATGCCGAAGATAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0015278-'20-14,'20-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):

C1:
PF0045422=PI3_PI4_kinase=PD(29.2=47.7)
A:
PF0078719=PX=PU(54.9=91.2)
C2:
PF0078719=PX=PD(44.2=74.6)


Main Inclusion Isoform:
FBpp0075818


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0075819, FBpp0291030


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCTATTGCCATCTCAAT
R:
ATTTCCTCGGACGCATCGAAC
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)