MmuEX0035132 @ mm10
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139896066-139900384:+
Coord C1 exon
chr6:139896066-139896255
Coord A exon
chr6:139896728-139896849
Coord C2 exon
chr6:139900276-139900384
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCTGTTTATCTGCAGCTG
3' ss Score
11.25
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAAGATAAAGGAAAGTCTGGAGTGTTTCCCAGTGAAATTGAATAACCTGATCCACACACTTGCACAGATGCCAGCCTTAAGCCTTGCCAAACCTGCCCCTCAGACTCTTCTCCAGGAATCCTGCATCCTGAATAAGACCAGGACAATTCAGAGAGTCACAATTTTAGGGTTCAGCAAGACACACAGCAAC
Seq A exon
CTGTACCTGATGGAGGTGACATGCAGTGACAATAGGAGAAGCCTGACCAAGAAGTCCTTCGAGCAGTTTTACAGACTTCACAGCCAAATGCAGAAGCAGTTCTCCTCCTTGGCTCTCCCAGA
Seq C2 exon
ATTTCCTCACTGGTGGCATCTACCTTTCACAGACTCAGATCACAAGAGAATCAGAGATCTGAGTCACTACGTGGAACAGGTGCTACGCGGATCTTATGAAGTTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'49-59,'49-56,50-59
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(16.0=26.6)
A:
PF0078719=PX=FE(37.7=100)
C2:
PF0078719=PX=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATCCACACACTTGCAC
R:
TGCAACTTCATAAGATCCGCGT
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types