BtaEX6023773 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:91927007-91932233:-
Coord C1 exon
chr5:91932044-91932233
Coord A exon
chr5:91931439-91931560
Coord C2 exon
chr5:91927007-91927115
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTCTTTTCTGCAGCTG
3' ss Score
11.33
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAAAATAAAGGAAAGTCTGGAGTGCTTCCCTGTGAAATTGAATAACTTGATCCATACACTTGCACAAATGACAGCCATAAGCCCTGCCAAATTGACTTCACAGACGTTTTCCCAGGAATCCTGTATGTCAGGTGCAAGCAGGTCAATCCAAAGAGCAACAGTCTTAGGGTTCAGCAAGAAAACCAGCCAT
Seq A exon
CTGTATCTAATCCAGGTGACTCACAGTAACAACGAAACAAGCCTGACAGAAAAGTCATTTGACCAGTTTGCAAAACTTCACAGCCAACTTCAAAAGCAGTTTGCATCACTGACCCTCCCAGA
Seq C2 exon
GTTTCCTCACTGGTGGCACTTACCTTTTACAAATTCAGATCACAAAAGGTTCAGAGATCTAAATCATTACATGGAACAGATATTAAATGGATCGTATGAAGTTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(15.2=25.0)
A:
PF0078719=PX=FE(38.1=100)
C2:
PF0078719=PX=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGCACAAATGACAGCCA
R:
GTTTGCAACTTCATACGATCCA
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]