GgaEX1043813 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66293851-66299795:+
Coord C1 exon
chr1:66293851-66294043
Coord A exon
chr1:66294590-66294711
Coord C2 exon
chr1:66299687-66299795
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTTTCCCCAATGCAGCTA
3' ss Score
8.61
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAAAATAAAGGAAAGTTTGGAGTGCTTTCCTGTCAAGCTCAATAACTTGATCCACACGCTTGCACACATGTCACTGGCAGGCTCTGCAAAGTTTCCATCTCAAGAGACTGTCCCTCAAGAATGGATGATGCTGAATGCAGAGAAGTCAATTGCAAGAGCCACCATTTTGGGGTTCAACAAAAAGTCTGACTAT
Seq A exon
CTATATCTAGTCCAGGTGGTGCAAACCTGCAGTTTGGTCACTTTTGTGGAGAAATCATTTGACCAGTTCTCAGAACTTCACAGCAATCTCCAGAAGCAGTTTCCATCACATGCACTCCCAGA
Seq C2 exon
GTTTCCCCACTCATGGCATATACCTTTTACGGATCTCGAACATAAGAGAGTGAAGGATTTGAATCTCTACCTGAAACAGCTATTAAGTGGATCCAGAAAACTGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(16.0=26.2)
A:
PF0078719=PX=FE(37.7=100)
C2:
PF0078719=PX=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGATCCACACGCTTGCA
R:
GGATCCACTTAATAGCTGTTTCAGGT
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]