RnoEX6015459 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:174032273-174036173:+
Coord C1 exon
chr4:174032273-174032462
Coord A exon
chr4:174032909-174033030
Coord C2 exon
chr4:174036065-174036173
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTTTGCCTTTTTCTCTGCAGCTG
3' ss Score
11.96
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAAGATAAAGCAGAGTCTGGAGTGCTTCCCAGTTAAACTGAATAACCTGATCCACACGCTTGCACAGATGCCAGCCTTCAGCCTTGCCAGACCTGCCCCTCAGACTCCTCCCCAGGAGTGCTGCGTCCTGAATAAAACCAGGACAATTCAGAGAGTCACAATTTTAGGGTTCAGCAAGACACACAGCAAC
Seq A exon
CTGTACCTGATCGAGGTGACACGCAGCGACAACAGGAAAAACCTGGCCAAAAAGTCCTTCGAGCAGTTTTACAGACTTCACAGCCAGATTCAGAAGCAGTTCCCCTTGTTGACTCTCCCAGA
Seq C2 exon
GTTTCCTCACTGGTGGCATCTACCTTTCACAGACTCGCACCATGAGAGAATCCGAGATCTGAGTCACTACGTGGAACAGGTGCTGCACGGATCTTACGAAGTCGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'36-42,'36-41,37-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(16.0=26.6)
A:
PF0078719=PX=FE(37.7=100)
C2:
PF0078719=PX=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCTGATCCACACGCTTGC
R:
GTAAGATCCGTGCAGCACCTG
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]