DreEX0006788 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50909063-50909943:-
Coord C1 exon
chr18:50909772-50909943
Coord A exon
chr18:50909244-50909362
Coord C2 exon
chr18:50909063-50909159
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGATG
3' ss Score
10.02
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
Exon sequences
Seq C1 exon
GAAAATTAAGGAGAGCATGGAGAGTTTACCGGTCAAACTGAACTTCCTGATCCACAATATGGTTCAGCTTTCCTCCAAGCGTCCAGAGGGGCTTTCTCAGAGCCAGACCTCCTCCAGCAACAACATCCAGCAGGCTGAGATCCAGAAATACACTGTAAAGGGCAAAGACGTG
Seq A exon
ATGTACGAGTTGAAGGTGACCATTGAGGACGGGTTCGTGATCAGCCAGAAGAGTTTCTCTCAGCTGGAGTCGCTCCATAAGCTGCTCCAGAAGCACTTCATCGAGTCCACGCTGCCCAA
Seq C2 exon
ATTTCCCAGCTGGTTCAACATGTCCTTCACTCCGGGCCGGAAGATGACCCTGCTCAACAAGTACCTGAAGGAGCTGTTTGAGGGACCGTGTCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(16.8=29.3)
A:
PF0078719=PX=FE(38.6=100)
C2:
PF0078719=PX=FE(31.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGAGAGTTTACCGGTCA
R:
CCCTCAAACAGCTCCTTCAGG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]