HsaEX0047513 @ hg19
Exon Skipping
Gene
ENSG00000011405 | PIK3C2A
Description
phosphoinositide-3-kinase, class 2, alpha polypeptide [Source:HGNC Symbol;Acc:8971]
Coordinates
chr11:17113706-17118811:-
Coord C1 exon
chr11:17118604-17118811
Coord A exon
chr11:17115808-17115932
Coord C2 exon
chr11:17113706-17113823
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTGATTTCTTTTCAGATT
3' ss Score
9.36
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCTTATTGAATCAAGTTTGGGAAGCATTGCCACAAAGTTTAACTTCTTCATTCACAACCTTGCTCAGCTTCGTTTTTCTGGTCTTCCTTCTAATGATGAGCCCATCCTTTCATTTTCACCTAAAACATACTCCTTTAGACAAGATGGTCGAATCAAGGAAGTCTCTGTTTTTACATATCATAAGAAATACAACCCAGATAAACATTAT
Seq A exon
ATTTATGTAGTCCGAATTTTGAGGGAAGGACAGATTGAACCATCATTTGTCTTCCGAACATTTGACGAATTTCAGGAACTTCACAATAAGCTCAGTATTATTTTTCCACTTTGGAAGTTACCAGG
Seq C2 exon
CTTTCCTAATAGGATGGTTCTAGGAAGAACACACATAAAAGATGTAGCAGCCAAAAGGAAAATTGAGTTAAACAGTTACTTACAGAGTTTGATGAATGCTTCAACGGATGTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=28.6)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTAATGATGAGCCCATCCT
R:
CTCTGCTACATCCGTTGAAGCA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)