RnoEX6004452 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185316976-185320325:+
Coord C1 exon
chr1:185316976-185317183
Coord A exon
chr1:185318717-185318841
Coord C2 exon
chr1:185320208-185320325
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATCATGTGATTTCTTTTCAGATT
3' ss Score
9.35
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCTGATTGAGTCAAGTTTGGGAAGCATTGCCACAAAGTTTAATTTCTTCATTCATAACCTTGCTCAGCTACGTTTTTCTGGCCTTCCTTCTAATGATGAGCCCATCCTTTCATTTTCACCAAAAACATACTCCTTTAGACAAGACGGCCGGATCAAAGAAGTCTCTGTTTTCACATATCATAAGAAATACAACCCAGATAAACACTAT
Seq A exon
ATTTATGTGGTTCGAATTCTGAGGGAAGGACACCTTGAACCATCATTTGTATTCCGGACATTTGATGAGTTTCAGGAACTGCACAATAAGCTCAGCATTATTTTCCCACTTTGGAAGTTACCTGG
Seq C2 exon
CTTTCCTAATAGGATGGTTCTAGGAAGAACACACATCAAAGATGTAGCAGCCAAGAGGAAAATTGAATTAAACAGTTATTTACAGAGTTTGATGAATGCATCAACAGATGTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'42-50,'42-49,43-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=28.6)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCATTGCCACAAAGTT
R:
TCCTCTTGGCTGCTACATCTT
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]