DreEX6065817 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27083526-27084234:+
Coord C1 exon
chr18:27083526-27083733
Coord A exon
chr18:27083902-27084026
Coord C2 exon
chr18:27084117-27084234
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTTTTGTTTTTAGACG
3' ss Score
8.99
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGATTGAATCCAGTCTGGGCAGTGTGGCTACAAAGTTTAATTTCTTTATCCACAATCTGGCTCAGTTGCGTTTCTCTGGCCTTCCCTCCAATGATGAACCCATCCTGTCGTTTGCTCCTCGGACATACACTATGAAGCAAGACGGCAAGATTCGGGACGCCTCTGTGTTTTCATTTCAAAAGAGATATAACCCAGACAAGCACTAT
Seq A exon
ACGTATGTCATTCGGATTCTAAGGGAAGGTCAGAGCGAGCCACAGTTTGTTTTCCGCACATTTGATGAGTTTCAGGAATTGCACAACAAATTGACCATCCTTTTTCAGTTGTGGAAGCTGCCAGG
Seq C2 exon
GTTTCCCAGTAAGATGGTGCTGGGACGCACACACATCAAGGATGTGGCATCCAAGAGAAAGGTTGAATTGAATAGTTATGTGCACAATCTGATGAGGAGTTCAACAGAGGTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.9=28.6)
A:
PF0078719=PX=FE(36.6=100)
C2:
PF0078719=PX=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCAGTCTGGGCAGTGTG
R:
ATCCTTGATGTGTGTGCGTCC
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]