GgaEX1043794 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12849628-12851382:-
Coord C1 exon
chr5:12851175-12851382
Coord A exon
chr5:12850139-12850263
Coord C2 exon
chr5:12849628-12849745
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTAATGTGCATTTTTGGCAGATA
3' ss Score
7.45
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGATTGAATCCAGTCTGGGAAGTGTTGCCACAAAGTTCAACTTCTTTATTCATAACTTGGCTCAGCTGCGTTTCTCAGGACTACCTTCTAATGATGAACCCATCCTCTCATTTTCTGCTAAAACATATTCTCTTAAACAAGATGGCCGCATCAAACAGGTGTCTGTATTTACATATCAGAAGAGATACAATCCAGATAAGCATTAC
Seq A exon
ATATATGTGGTGAGAGTTTTGAGAGAAGGACAAGCTGAGCCAACTTTTGTTTTCCGAACATTTGATGAGTTCCAGGAACTCCACAACAAACTTGGCATTCTTTTTCCACTTTGGAAGTTACCAGG
Seq C2 exon
CTTTCCTAATAAGATGGTTCTGGGAAGAACACATATAAAAGACGTAGCTGCTAAAAGAAAAGTGGAGCTCAACAGCTACATACAGAGTCTGATGAACAGTTCTCCAGAGGTGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'33-34,'33-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=28.6)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGTTTCTCAGGACTACC
R:
TGCCACCTCTGGAGAACTGTT
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]