MmuEX6027389 @ mm9
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134997302-134998974:+
Coord C1 exon
chr1:134997302-134997503
Coord A exon
chr1:134997907-134998031
Coord C2 exon
chr1:134998857-134998974
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGAGTTTGTCCTTTGCAGGTA
3' ss Score
9.97
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTTGATTGAGTCCAGCCTGGGCAGCGTAGCCACGAAACTCAACTTTTTCATCCATAACCTGGCTCAGATGAAGTTCACAGGCTCAGATGACCGGCTGACCCTCTCCTTCGCTCCCCGGACACACACTCTCAAGAGCTCTGGCCGCATCCGAGATGTCTTCCTCTGCCGACATGAGAAGATCTTCCACCCCAGCAAGGGCTAT
Seq A exon
GTATATGTGGTGAAGGTGATGCGAGAGAATGCTCACGAGGCGACATACATCCAGAGGACATTCGAGGAGTTCCAGGAACTGCACAATAAGCTGCGCCTGCTCTTCCCTTCTTCCTTCCTGCCCAG
Seq C2 exon
CTTCCCTAGCCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGAGGAAGGAGGAGTTAAATGGCTACATCTGGCACCTGATTCATGCAGCCCCTGAGGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'32-37,'32-36,33-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=29.4)
A:
PF0078719=PX=FE(36.3=100)
C2:
PF0078719=PX=FE(34.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAGTTCACAGGCT
R:
CTCAGGGGCTGCATGAATCAG
Band lengths:
250-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: