BtaINT0112015 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44127003-44127777:+
Coord C1 exon
chr4:44127003-44127061
Coord A exon
chr4:44127062-44127745
Coord C2 exon
chr4:44127746-44127777
Length
684 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTGGCTAATTTTTCTTATAGGGT
3' ss Score
7.58
Exon sequences
Seq C1 exon
AAAACAGGAAAAAGAAGGTCTACGGTGTATGTGAGAAATATTCTTGATAATGCAATAAA
Seq A exon
GTAAGTAAAATGAAGGATTATTATAGCTATAAATGGCTATCTTTTGTAATTACTTTGCTGGCTGCCTTTCAGGGAAGTAGCTTATTACTTTTGTTGTATTCTCAATGAGATGATGCTGTCAGCACCGCCCGAGCCCTGTTTTGGAGATTGGAGCTAGAGTTTCTTGTAGGAAAAGTTTATATGTTAAACCTTTTAGATTTGCATCCTGGGGATGGATGACTCAGAAGGAATAAGTGGTAATGAAAGCTCTTACTAATAGAGCACTTTAAAGGGGTACAAGTAGTGGGTTGATTTTAAATAAGAGTTAGTCGGCTGGTGAACCTGCTCTTATTTTGAAAACATGTTTTCTGAGTAGATGAGTCATCTCGGAGTGCTACAAGCATAGGCCCCATTCCAACCCCTGTTCTATTTTCTGTTCCTATTATTTCCAATAACTGAGAGCTGCAATTGTTCTAAATTACCGTCATTGTTTGCACTAAAGAGTTTTGAGATTTTATAATTGCTTAATGTGGCTTTTGCCAAGTTGATTAAAGTTTTTGAGGTTTTCAGCAGCCTGAGAACAGTCTCTGCAGTGGTTTTATGGGTTTTTAAACGACAGTATCTTTGTATGGTATTGTGGGTTTAAAAAAATTTTTTTTTATTAATGTTTCCTGTGTGAATAACGTTGGCTAATTTTTCTTATAG
Seq C2 exon
GGTGATTTCTAACGTAGAAGCAAAGAATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430:ENSBTAT00000024520:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]