MmuINT0120077 @ mm9
Intron Retention
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20776374-20777066:+
Coord C1 exon
chr5:20776374-20776432
Coord A exon
chr5:20776433-20777034
Coord C2 exon
chr5:20777035-20777066
Length
602 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
AACACAGAATTTCTTTGCAGGGT
3' ss Score
4.99
Exon sequences
Seq C1 exon
AGAACGGGCAAAAGGAGATCCACAATGTACGTGAGGAACATTCTTGAAAACGCAATGAA
Seq A exon
GTAAGTATGATCTGGCTATCATGGACCTGGCTGGCTGCCTGTGTGGTCAACTCTCAAGGAACTGCTGTCCTTGGCTTCCTGTAGACCACTGGGTGCTGGAGTGTCTAGAGGGAGACACTTCTATAGGCACACACCCTATAGAGGACCACTTATGATGGATAATGGTAAAGTCGGCTTTTATAAGTGAGTACTGGCAATGAAAGACATAGTAGTTTGATTTGCTTTAATTGTTGGTGGGCTGGGTTGGTGGAACTTGCTCTTATTTTGAAAGCATATTCTCTGGGTAGATGAGTCATCTCAGAGAACTAAAAGTGCAGGCCTCAGTCCGGCCTCTGTTCTGTTTTTAGCCTTCGTTATTTCCAATAACTGACAGCTGCAATTTTTCTAAATAATTGCTGTTGTTGGCTCTAAAGGGCTTTGAGATTCGTAATTGCTTAATGTTCCTTTCAGTACACTGATTAAAGTTTTTGAGTTTTCAGGTAGCCAGAGAATGGTTTCTGCATGGTTTTTGGGGCTTTAGAGGGGAAACATCTGCATGGTGCTGTGGCTTGAAGTTTTTAAAGTGATGCTTCTGTTGGAGATAACACAGAATTTCTTTGCAG
Seq C2 exon
GGTGATTGCTAGCATGGAAACGAGGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-Pion:NM_175437:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: