GgaINT0120682 @ galGal3
Intron Retention
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13675093-13675610:+
Coord C1 exon
chr1:13675093-13675172
Coord A exon
chr1:13675173-13675573
Coord C2 exon
chr1:13675574-13675610
Length
401 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
CCAGGGTGCTTTCTCATCTGGAT
3' ss Score
-1.54
Exon sequences
Seq C1 exon
GATTTTTATTTATTTATAAAACAGACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
Seq A exon
GTAGGTACTGTTTTGTATATTTACCCTTTCTTACTTTGTTGATATGTGTTGAAGGATTTAAATGTGTCATTTAAATAGCTACTCTGGTATCTGATCAGATATCTTGCTCTGAAGATGAGTATCCAGCTGAAGATGGTTTATGACAATCCTTGTAGTCACTGCAGGATGATCTGAATTATCTAGGCTGCTAGAGCTCAGGAATTTATTGTAAATGTGAGAAGGCACTACCCAGACAAATAGAATTCTTTCTTTACCAAATGTAGATTTCTTGAATTTCTTCAGCTACCTTTGAAAGTCCAGAGGGTTCTTTAAGCTTTTTGATGTCCTTACAAAATCCGTTAGAGTAATGGTTGTGAAACAAACTGATTTTTGTTTCAAACCCCAGGGTGCTTTCTCATCTG
Seq C2 exon
GATGCTTGGGACTCTGGTAAGTAAAACTTTTGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=FE(28.6=100)
A:
NA
C2:
PF042697=DUF440=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]