BtaINT0112586 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55245772-55253833:-
Coord C1 exon
chr3:55253742-55253833
Coord A exon
chr3:55245949-55253741
Coord C2 exon
chr3:55245772-55245948
Length
7793 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTTAATGTTTTCTCTTACAGCCT
3' ss Score
11.14
Exon sequences
Seq C1 exon
GTGCTTTTGGCTGAATATAAACACACTAATGAAATGTTTGCTATAAAAGCCTTAAAGAAAGGAGACATTGTGGCACGAGATGAAGTAGACAG
Seq A exon
GTTAGTTTTTAAAAATGAAATTGTTACACTTTTCTAAAGTTATAACTTATGAAAATCGATGTATTCAGTATATATCGAAATGACAAAATTATCTCTTTCAATAATACAGTCGATTGTTGAATAACATGGTCTTTAACTACGTGGGTTCACTTAAATATGGATATTTTGCATTTAGTAAATGCTGTAATATTACGTAGTTTGTGGTTGGTGAATTCATAGATGTGGAAGAACTGCAGATACATAGGGCTGACTGTAAATTATGCACGATTAACCCCCATGTTGTTCAGGGATCAACTGTTATAAGTAAAGAAACTAAATAAATTAATGCGTGAGGTGGGTATTGATTAAATATTGTTTTTCTTTTTAGCTAATTCCCTCTTCCCATTCTTATGACATTTTACTGCTTGGTGAATACCAAAAAAAGTCGATGAAATCTTTAAACTAATTCTAATAAGTTTTTATACTTGGAAATGTTGAAATATTTGTATGAATTAGGAACTATTACACATCTGTGGTTGGGTGAGGCTATTTCTCATTTCATACTACAGAAGTAATAAGATGTCATTTACAAGTAATCTTCAGTTAAGTGGTTAATTCCTTCTGCTTTTTAAAATACACCTGTATCTATTTTCATTTCTCTTAATACGGTAGCTTTTGACCACAGCATCTTTCCTTTCTGTGTGTAAATTGGTATGGATTCATCTTCATATATGATTATTAAAATGTAAGGACTTTGGGGATAATATTGTAATTAGGTTAGAGAATATATTTTAAAAAGACTATCTCAAATTAATGGAGTGGTTCAACCTGGAAATTGTTGTATAATAAAATGGCATTTTATTACAGAAAGAGACATTTTTTTATATTTAGAAGAACCAGGAAGCATCAGTTGATATTACTAAAAGGCAGCCCTATGTAATGAAAACAGCCTGGGATTATGAGTGAGAAGATTCTCTAGTCCTGATTGTTCCTTCTTAATTAATGATTTGATCCCAGGGCAATTCACTGAACATCTTTGAGCCTCAATTAACCCACGTATTTTTAAAATACATTTTTTGGTAATACTTGCCTTACTGAATTGGATTATTGCCATGTAATATATCAAATTGCTATTTTTAACATATTTCCATTGTATGGGAAGTTCTTAGAATTAGGATCAATCTTAAAAGATGAGCGTTTCCTTTATGTAAATCTTTTCCTTTTGGATTTGCCTATTTATTTTTTATCTGTTTCTCATACTCCTCAATTATGTCAAAATAAACTCTTCCTTGATCTAAAACAACTCAGGATTTTGCATAATATTTATAAAATATTCTGAACACCATAGTATATGCTAGCAGTTACATCAGTAGTTAAAGCAAACCTTTAATTACACTGTCAGTCTGTTTTTAATTACAGTAATAGTACGGTCAGATGTTTTTCTGGAAGAATATTTGCTTTATTCCAGATCCATAATGGTAAATTCATTTATAGCCTAAAATAATAGTTAGTAATATGAAAGTGGTAATTACTTGGTGGTTTATATAACTTTCTGCTACATTGTTACTGTTTTGAGCCACATCTCTGTAGGAAAAAAAACTTTGCAATTAAATATAGATAGAATAATGTTAATATTACTATTAAAGAAGAATGTCTGGATCAGAGGATGAAGCTTTAGCCAGATTCAGTGGACATGGGTTTGGACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAGTTCATGGGGTTGCAAAGAGTCAGACACGACTGAGCAACTGAACTGAACTGAACTGAGGACATTACCCCTACTTTAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCGTAATGACCCAGATAACCACAGTAGTAGGCTCACTCATCTAGGCCAGATACCCTGGAGTGCGAAGTCAAGTGTACCTTAGGAAACATCACTATGAACAAAACCAGTGGAGGTGATGGAGTTCCAGTTGAGCTATTTTAAATCCTAAAAGATAAGGCTGTTAAAGTTCTGTACTGAATATGCCATCAAATTTAGAAAACTCACTCAACAGTGGCCACAGGACTAGAATAGGTCAGTTTTCATTCCAGTCCCAAAGAAGGACAACGCCAAAGAATGTTCATATTACTACACAATTGCACTCATGTCACACGCTAGCAAAGTAATGCTCAAAATTCTCCAAGCTAGGCTTCAACAGTATTGAAACTGAGAACTTGCAGATCATCAAGCTGGATTTACAAATGGCAGAGGAACAGAGATCAAATTACCAACATCCTTCGGATCATAGCAAGCGAGGGCTTCCCTCATAGCTCAGTTGGTAAAGAATCCACCTGCAATGCAGGAGACCCTGGTTTGATTCCTGGGTCAGGAAGAGCCGCTGGAGAAGGGATAGGCTACCCACTCCAATGTTCTTTGGCTTCCCTTGTGACTTAGCTGGTAAAGAATCCACCTGCAATGCGGGAGACCTGGGTTTGATCTCTAGGTTGGGAAGATCCCCTGAAGAAGGGAAACGCTACACACTCCAGGTTTCTGGCCTGGAGAATTCTATGGTCCATGGGGTCACAGAGTCGGACATGACTGAGCGACTTTCACTTTACTTTTCATTGGATTATAGAAAAAAGCAAGGGAATTCCAGAAAAAAAATGTCCTTCTGCTTCACTGACTACGCTAAAGCCTTTGACTATGTGGATCACAACAAACTATGGAAAATTCTTCAAGAGATGGGAATACCAGACCACCTTACCTGCCTGCTGAGAAACCTGTATGCAAATCAAGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGCTCCACATTGGGAAAGGAGTACGTTGAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGTAGAATACATCATGCGAAATGCTGGGCTGCATGAAGTACAAGCTGGAGTCAAGATTGCTGGGAGAAATATCAATAACCTCAGATAAGAGGAACTAGAGAGCCTCTTGGTAAATGTAAAAGAGGAAAGTGAAAAAACTGGCTTAAAACTCAACATTCAAAAATCGAAGGTCATGGCATCTGGTCCCAAATGTCATTTGTCACTTCATGGCAAATAGATGGGGGAACAATGGAAATAGTGGGAGACTTTATTTTCTTGGGCTCCTATTACTGCAGATGATGACTGCAGCCATGAACTTAAAAGACACTTGGCCCTTGGAAGAAAAGCTATGACAAACCTAGACAGTGTATTAAAAAGCAGAAATCCTTTGCCAACAAAGGTCCGTGTAGTCAAAGCTATGGGTTTTTCCAATAGTCATGTACAGATGTGAGAGTTGGACCATAAAGAAGGCTGAGTGCCGGAGAATTGATGCTTAACTGTTGTGTTGGAGAAGATTCTTGAGAGTCCCTTGGACTGCAAGGCGATCAAACCAGTCAATCCTAAAGGAAATTAATCCTGAATATTCTTTGGAAGGACTGATGCTGAAACTCCAATATTTTGATCACCTGCAGTGAAGAGCTGACTCGTTAGGAAAGGTTGTGATGCTGGGAAAGATTGAAGATAGGAGAAGGGGACGACAGAGGATGAGATGGTTAGATGGCATCACTGACTCAATGGACATGAGTTTGAGCAAGCTCTGGGAGATGGTGAAGGACATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTCCTGTCCATCACCTACTCCCGGACCTTATTCAAAATTAATCTAGCCTTAGTGAAAGGTTGATGAGTGATCTTCATTTTACTTCAGTTATAAATTTACTTATTTGGTAACATGGAAGTAAAATAATCTCCAGTAGAAACAGGGAAATATAAAATTCAGAGTGAGAAATAAAACTCGCTCTTAGAGGAATTTGAGGAAAGCATCAGAAAGAGAACAATTATAGGAAGGCAAGAAAAAAATTAATTTAGGAAATAAGAAAATAGATTAGCATGTTTTTAAAAATAATGTAACTTGAAAGTCTGAATAGTAAATAACTAAACAGAAATCCACTATATCCACTTTTCAGTTCATTCTTTTAATAGATCCATAGAATTCAATGTTATTGCATATAAGTGCAGTTTTTTAATAGGTATTTCTGGAATACTTGATGGTTCTTAATGTCAGTTTTATTTTCTAAATTTTATTTTTCTAGTATGAATCTTATTATTTTACTTATAGAAAATTCCAGACCAACTTATTTTTTGTTTTTTTGGTTTGTTTTTGTTTTCTGCTGCTTTTATTGAGACAGAATTGACCTGCAGTACTGTATAAGTTTAAGGTGTACAGCCTCATTATTTGATTTATGTACATCTTGAAATGATTATCACAGTAAGTTAAGTGAGCATCATATAGATACAAAATTCAAAAATAGAAAAATACATATTTTTCCTTATTATTCTCATTATTCTCTCAACAACTTTTATATATAACATACAGCAATGTTAATTTTATTTATCATATTGTACATTATATCTCTAGTACTTACTTATCTTATAACTGGAAGTTTGAACATTTTTTACTGCCTTTACATAAATTATGCACTAACTTCAAAGTAATGCAATTCATGTACGAAGATCACGTTTTCCACCTACCAATAGTTGAACTTCCTGAGTGCCATCTTCCCCTACTCCTAAGTAAGAATGTTAAATATATGTTACAGTTATGCCTCCTCATTCAGCTTGGTTTCTGTACCAGTTCAAATTTCCAAGCAAAAGAATAGACTTGGAAGTACATTTTTGCAGTTGCAGAACAAAAACATGGCTAGCCAGACTTTTTATATATATCATATGTACATATATATGCTTTAATCCTAAGATTAGCCTTATTAGTGATGTAATTTTCTACTGACCAAAATAACTATTTATATAGTTTTTAAGTTTCTAACATATCTAATAATGTACTAAAGGAAGTATGCAAAAAAAAAATGTTAGAATTGAACTAGTCACTTAGGGAGATAAACCATAAATACATTATGCAAATAAAAGAAATTAGATATGCTTGAGTTAAAGATAAACAACAGACAGTCACAGCTCATAAAAGGGGAAACATCAAAGTGACAATGCACTGGTGGATGTAGGTAAGACCTTGTAAAGAAGAATGGATTGTGCTGGTCTTTGGCAGATGGAAGATATATGGGAACATGGAGAGGAGAAATGACAATTTAGGGAAAAATGTTTTGGACAAAATGAATAAAGTTTCAAGTTTTTCATGGACTTTTAAGGAGAACATACAATTTAGATTAAATTGGGAAAATTTAAAGACTTATGGAGCAGCTTTTTGGTGTGATGTAACATGCTTAAAATTATTATTCTTGTTTGGGTCTGTAAAAGAGCTTTCCTCCTTTACCTAAGATCTATATCCAGTCCTCATCAATATTGTCAGTCCTCATCAAAGAATTCTATGAATGGGATTAAAACCATTTTAAGGAGCACTCTCATCAGTTCTTTAGACCATTTATATGTTCAACACAGGTCTAACCTTATAGTTACCCATCCAGTTGAGAATCAGTAACTCACCAGTAGTGGATTAGTAATTCATGCATGACTGATACACAGTGAAGAGGCCATGTTTGTCGTCTGCTTGACAACAAAACATCTTGTCAGTTTGTTATTTCATGTGTATATTTTATCCTAATTAGCCACAATTTAGATAGACTGAGTAAATCACTTGTCTTAGAATCTAATTTGCAGATCTTGCCCAATTGTACATTATTTTCCAATACATTTAAATGGTGATAAAGTCAAAGCTATTAACTTTTCTTTTTAATCATCTGTGAATTTATTTCTAATAGTGACTTAATTTGCAGTAGCATTTAGAAACCTTGCAAATGTATGTAGACATAAGCCAAACACTCTAGAAGCAATTATAATGGGGGTTTCTGAGTATATATAAAATTATAAACAAACTGTATGAAATAGAGGGTAAGAACTCATCTAGAATATGACCATATTAGATCTACTGTAAACACTATTTCATAGGAGCTATATTTACTGTATTTAAAACTGAAGAGATGTTTTAGTTCATCATTCAGAATACAACTATATTAACAGCATTGAAAATTCCATGTTCCTTCTACACAACAGTTATACTTTTAAATGTTTTAAAATTCTCTTTAATTTTCTTGAGTCATAGCAATATAGTCTGGATATCCAGACAAATGCTTTAATCTTTAACCTGTTAAAATTAATTCTTAAGAGATCCCAAAGAAAGGAGAATGAGTCTACCTCCTTCTAACATTAGAATTTTGGTTTGGTATTTTGAAATCAACAACCACATATACACATAAACACAAATCTAAACAATTCGTTAATTTTAAAAATAAAAGCATTATTAATGCTTTTCAACAAACTTTAATAGCAGTTTTTTATTCTGGTCTCAAAAACAAACCAAAAAATGCCTATTTTATGTTAGAAACATAAATGTAAAATTAAATTTGTATATTGATGAGTCCTTAAAACGTTAATTCAAAGTTATATTTGAATAATGTTTGACCTGGTTTTCTTCTGCTTTGAGGTTTTTTTTTTCCTTTCAGTTACATGTATACGTGTGTCTATTTTTCAAATTCTTTTCCCATTTAGGCTGTTACATATTATTGAATAGAGTTCCTTGTTGGTTATCCACCGTAAATTTACCAGTGTATATATTTCTGCTTTGAGATTTAAGTCAGGTTGATTTACTAAATGTTTTCAGGGGACAGAAGGTTGGTATTTCTTGCCATTTAGGCAAAATTAATGTTTCAGAGTCAGTAAGTTTGACCACTGTTCTTTTAAACAGTTTATAAGAATTCTTACAGGGAAAACCTGTGATAGCTATATAGATTTTATAGATAAATTGTATCATTCTCCAAGAGCTTCCTATAAGCATGTTATAGAATTCTCCATGAAACTCCTTTATTTTCCAGTAGCCTTCTAAATTAAAATACTATATAGTGTATTTTTACCTCTCAGCTTTATATGATAGAATATTTGGATACCATAGTTTGTGAATTATACACTATCCTTGAAATCACCTTGATGACAAAGTCTATATTTTAAAATTATGCTTTAGGTTCCTAAATCCTCTGACCAATTTCTGAAAAATGTTCACAATTCACTTGCAATTAAGACATTTTTATGATTACCACTAGTCTTATGTGTGCTACTCTGATACTATCAATAGTGAATTTTATGTCATGGTAATCATATTTAGATTAAAGTTGTTTATATATCACATAGCCCAAATTTTCAAAGCATTTATAGCAAAATGACATATTTTACGGTTTTAAAGTCATAATGATTAAGAGCTTCGCTTATTTTAAGAGTTTAGTAATTTTTAAAGAATGTTATTTGCAACTAGAACTTTAAAAAAAAATACCAGTGATATTTTAATGTTTTCTCTTACAG
Seq C2 exon
CCTGATGTGTGAAAAAAGAATTTTTGAAACTGTGAACAGTGTAAGGCATCCCTTTTTGGTGAACCTTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTTTGTAATGGAATATGCTGCCGGTGGGGACCTAATGATGCACATTCACACTGATGTCTTTTCTGAACCAAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900:ENSBTAT00000029201:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]