BtaINT0112640 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046350 | PKP1
Description
plakophilin 1 [Source:HGNC Symbol;Acc:HGNC:9023]
Coordinates
chr16:81683387-81693012:+
Coord C1 exon
chr16:81683387-81683759
Coord A exon
chr16:81683760-81692905
Coord C2 exon
chr16:81692906-81693012
Length
9146 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCCTGTCCTTGTCCCCAAGGCT
3' ss Score
7.23
Exon sequences
Seq C1 exon
GGCGGGTGGAGGCGCCGGGAGCAGCCCAGAGCCGTCGCGCGCGCGGACCGTCGCTCTATGGGCACAGGGAGCCGCTGAGCGCGAGAAGAGCCCGCTTCCGCCGCCGCCCGCACCTCGCGCCGCTCGGCTCGCTCTCCAGGCCCGCGCCCCGCGCCCCGCGCCCGCGCCGCCATGAACCACTCGCCGCTCAAGACCGCCTTGGCCTACGAATGCTTCCAGGACCAGGACAACTCGACGCTGGCTCTGCCGTCCGACCAGAAGATGAAGACCGGCACGTCGGGCCGGCAGCGCGTGCAGGAACAGGTGATGATGACCGTCAAGCGGCAGAAGTCCAAGTCTTCCCAGTCGTCCACCCTGAGTCACTCCAACCGAG
Seq A exon
GTGAGGGCCGGATGCCCGCGTGGCCGTTCGCCCTTCCCCGACGCGCCTCCCAGGTGGCAGGGCGAGGGGCGCGCGCGTCCCCATCTGGCGGCGCGGGGCAGGGTCCGCGCGGAGGGCCCCAGCGGGTGCGCCCTGCCTCCTGGTCCACCGTGGAGCCGCGGCCCTGACCGCTCAGTGGCGGACAGTCAGGGCCGACCTCGGGTCCCGGGGTTCTCTTCCCCAGCCGGCTCAGGGGTCTCTCCCCAGCCCGATCCTGCCCAGCTGCCCGTGGTCGAGCGCCCCTCACCCTTCCCACCCCAACGTTCACGGACTTAGCTGCGGGGTCCCGGTCCGGGGCGGAGGGGCCGCCCAGTGCCTGGCTGGGATGGACTGGGAGTCACGGAGCCCGCCGAGAACTCGGGAGGGGCTCGCACTCCGGGAACCGGGCACAGGAGGCAGGCGCCCTCTGATGGCGCCGGCGCGGGAGCCTCACACCCGGAGGAGGCAGTGTGGTTCCCAGGTGGCCCCAGGGCAGCGCGGACCGTGGGGGCTGAGCCCGGGGAAGGGTCCAGGACGCCCTCGAGGCTGAGAGCAGCCCCCTCTCCCTCAGAACTCGCCTGCCCACTCAGCCGGTGTAGAAGTGTGCCTCTTAGAGGCCAGAGGCAATTTGCTTGGAGGCCAGAACCGCCCCTACCCCTGGCTGGGCCCTGGTGCTGGGCACTCCTTGATCTAGGCATGGGCCTGGCCAGCCCCTCCCTGCCGCGCTGAGGTCCCCCAGCTGTCAGAGAAGGGCAGGAGAAAGGGGCAGGACCCCTGAAACTCAAGGAGGAAGGTCTGTTACCTGACAGTCGCCTCAGTGGGAGTTCTAGACCAAAGACTCATACAAAGCATTTCCCAGTGAGAATTACATGTAAGTCAGCGGGTACCTTCTACTTAATTATTTAGTTAAGTTTGTGAAAGTCCGGTCAGTCGTGTACAGCTCTTTGGGATCCCATGGACGGTAGCCTGCCAGGCTCCACTGTTCATGGAATTCTCCAGGCAATAATACTGGAGTCGGTTGCCATTTCTTTCTCCAGGGGATCTTCCCAACCCAGGGACTGAACCCGGGCCTTCTGTATTGCAGGCAGATTCTTTACTGTCTGAGCCATCAGGGAAGCCCAGTAGTTTAAGGCTAATGAGGAAGCTGCAGACTGTAAACCAATACAGGTCAACCAAGGTTTATTTATTGGAAAAAAAAAAAGAGGTATATTTTTCAAGTCAGGAGCTCATGAGAGAGTGGGGTAGACGAGAGTAGTAAAGAGGAGGAGACAAAGGGGACGGACCCCCGCCCGTGGTCCACATGCACACAGGTATGCACACACACACATACCACCTCTCTCTCTCACACACACACACAAAGACACACACACACACACACACACACACACACGGCAGCTCACGATTTCTACCTCCGTGCCTCCTTCTCTCCCCTGAGTGGCCCCAGGTACAGCTGAGGGCGAGAAGATGGCTGGCAGAGGACTGCTCTGCGCCCAAGCCCGCATGCCTGTGTGGCTCTGTGCCCCCGCCCTGGCTCCTCTCCCGCCAGGCTCCCACTCAAAGTCGCAGCTTCCGGAGTGCTTGCCACCTTCGTGTTTGCTTGGGGCCTCCGCGGCTGCTTCCAGCCTTTTTTGGAAGTAGGACTGGAAAACAAGTGTCCCCTTTCTGGGCGCAGCGCAGTCGCTGCTCAAGCCGGCTTCCTCTCTCCCTGGGACGGGGCTCGCCGGTCCCTCCTCGCCCGCTCCTCCCTGGCCTGCGCTGGGGGCCGCAGCTCTGTAGAAGACAGCCAGGCGAGGTGCCCGATGCCCCCTCCCAGCCCCAACGGGGTGCCGGCTGGGCGCCCCAGCCTCCCTCTCTGTGGCGACGTCCACCCCTCCCCTTCCCACGCCTCCACCCCGAGGTCCTCTGGGGGCGTCAGCAGGTGTGCGTGGACTCTGCCGATAGCCAGCGCGTCCCTCTCCGAGGGCTGACCCTGTAGGCGTGTCCCTTTTACCCTTGGCTTGGACCAGTTTCCCCAGCGGGCGCTGTAACTGGGCGAGGCCGTCAGGCCACCTGGAGCTGGTGTTTCTGGTTTGTCTGGCTTTGTCTTCCGAGGGATCCCCTCCTTCCGGCGAGCACCGCCCAGGCGCCCCTGTGCGCTCCGCGACCACCTCTGCCGGCTCTGGTCTCTGTTTGTCCCGTTGGTGTCGTTTGACGCATGTGCTCTGGTTCCCAGGACGGGTGACGGGGTCCCTGGGGGGACCCAGGACAGACTCGGTTCTCCTGCCGTTTCCCACGACAGGAGAGCAGGCTTCTGTGGGGTCTTTGATTTTCCCGGGCCCCTGCCCTGGCTCCGGCCCCACGGGGCTGCTCTCCACCTGGTCCGTGACATGAGGGGCTTGGAGCCTTGGAGGATGGGGAAAGGGGCCCGTGGAAGGGGCCTGGCGCAGACGCCGTGCCCTCCCCCAAAACCTGGGCCCAGACAGATGCCCTGCCCAGCCAGGCAGTGCCCAGGGAGGGAGGGGGTCTCTGGGGCCTGGACACCCTTCAGGAGGAGTCTACTCGGGACCTGCGCGCCCCCCCCCCCCCGCCGTCTTTTCCTGAAGGGGCTCTGGGGCGTGGCTGCCCTTGCTTCCTAAGGGTGCCCGTGGGCAAAGGGTGTAAGCCCAGGTGGGAAGCAGAAGGAACCTGGGAGGTGGCCACCCAGTGGGAGATGGGGGCTGGAAAATGTGACCCCCTTGAGGGGGAGTCCATGCGGGGTGGATTGTGTGGGAAGGGGCTGGTGCACTGTTGTCCTGCCCAAGGCCCTGTGGCGCTCACGCCCTTTACACTCCGCTCAGAGCCTCTGCTGAAAGCTGACCAAGCCTACTCAGACTCAAATCCAAACCTACCACCACCACCACGCGCACACACACACACGCACGCGCACACACACACGAATGTGCACACACGTGCACACACGCATGCACACACGCAGACACACGCACATGAATGGGCACACCCTTGCACGCACAAACACATGCTGGAGCCCACTCCCTTCTGCACACCACTCCTCACTCCAGGGAGTCCTGACCTGCCCACTCTGCCCACTGCCCCGAGAGGCGTCACCACGGGCTGGGGGTCCCATCTGCACCCTCCTCAGCAGCACGGGCAGAGGTGGGGGGTGCGCGGGGCAGGTGTCCTCTCCCCGAGGCCCTCCTGGCGGAGGCTTGCACCCAGGGGGAGGGTTGGCACGGCCCCGTCTAGGGCCGCGCTGGCTGGCTCTTGGACTTGCGTGGGCCATGTCTCAGCACAAGGCTGCACCCAGGGCAGGGGTCCGCTCTCCGCTCTCTCGGAAGGTGCCCCGTCCCGGGCACGGGCCAGGCTCAGACGGCTCTGCTGGGCTTCTCCCTCAGGACCAGCGCAGAGGGGCGACGAGGGCGGGGTGCCTGTGGCGGCCTGTCCCAGAGCAGAGTGTCCTGATTACACCTCGCGGGAGCCAGTCCTCCTTTCTTCACAAGGCCTCTTGGCTCGGAGCTGAGGATTTAGCCAGCATTTCCACCGGCCTGTCACAACACATGCTAAAATGCCGAGTAGCCCGGCTGTCCCACGGCGCACGCCGTTGCCCAGCTTCCTGCCCCTTTGCTAAGCTCATTGACAGAGATTAAAAACAAACAAAACAAACTCCTCTCCCCACACACCACACTATCTATACCAATACCCCAGTTGTTCGAGGTTTAAAACTCTGGGAGCTACCTCTCTACAGGGCATGACTCCTAGAAGGTGTGTGATGTTTGAACAAAACAAAATGAAAGAATGCTTCCCGGGAGTGGGAGGTAGCCTAGTGCAAGGCTCTTTATTGGCTGCACCTCTGAGGCACGCACATGTGCACACAGGTGTCCTCGCACACACACTCACCCTGCCTCCCAGCTCGTGCAGCAGCAGGAGTCCGGCTGGCCCCCGGAGGCTTGAGCGCTCTCTGGAGCTGTTGCCAGCTGCTGTGTGACCTCAGGCCAGCCCTGCCTCTCTCTGGGTCTGTGCAGCCGTAAGAGGTGGGGTGTGATCGCCCCCCGATGTTTCACTGGAAGCAGATTGTTTGTCTCGCTGCCTCTGCAGACCGTTTCCCCAAACCACCTGCCGCGGCAAAAGGCCGCTCCTCACAAGACACAGCCCTCCCTGTCTCCCTCCAGGAAGCATCGGATCACTAAAAAATATCTCCCAGTGCACACTGCTCTCAATCGTGGCCATGTGTTGGCACCGTCTGGGAGTTTTAAAGAATGCGTGTGCCCGGGTCCCACCCTGGAGGCTCTGGTTTAGTTACTGTGGGGACAGCGTGGGCAGGTGGACTTGCAACAGAGTTCAGGAATCCTTGTTCTTGTCTCCACCCTGCCTCAGACAGAGACCCAGTGTGGGGATCACCCCATCGCATGCGCGCGCACACACACACACACACACACGCACACATATAAATGTCATCCAGCGTGGCGGTAGCTGGGGACAGTCGTTTACTCTGGAACCCCCCGCGGGGTGAGCCCTGCCCAGCCCCGCCCCCTGTGCCAGCCCTGCCCTTGGCTCAACCCTCAGGCTCAGCGGTGGCCGCGCACAGATCATCAGAAGGAGAAGCAGGTTCAGAGCTGGTTTGAGCACGCCCCAGCCAGCCCTCGGAGTCACGTGTGCTGGCGAGGGACGGGGGAGACGGGGCTGTGGCGGCCCAGGCCGCTCTGGTGTCTGTTCCTACACGTGCGCGGGAATGGGCAGGACTGTGCCAGGGTGGCTGTGGGACTGGGTAGAACGCCCTCATCCAGGGCTGGGTGGCACGTCCAGAGCTCCCTCTGGCCTGGGCGAGGGCGGAACATCTCCCGCCATGCCTGGTGGTGGGAGGGCAGGCGCCGGGCTGCTGGACGGTCCAGGCGCCCAGGCGTCTCCTGTGCCATCTCCCCACAGTCCTTACTGTCTCACTGAAGTCCCTCTTACTGTGGGCCCCTCTGCTGGGCACCCCTGATGGGAGGGATTTAGGGGGTGAAGCAAAAGCATTTCAGGGCCAAAAGGTAGTGGGCGTCCTTTCTCAAGCTTTTGTGCTGAGGAATCGACGTAAGCACGAGAGCACCCGGAAGACAGGGCCTTGTGGGGCCGTTGGAGGCGCCCCTCTCTGAGGCCCGGCGGCTCGTGGGGGTGGGGCGTGGGGGCTGGGGAGGGGGGTGGACTCTGCCCTGGAGCAGCCTGGCCGGCAGGCTGGCTAATATCCCAAGGACCTCCTCGAGGTGGAGTCCGGTCCTGGGGTTGGCGTGGGTGGGGACCTCCCCCGACACGCACATACGCACACACATGCACACACACGCACACGCACACACGAAGAACACATGGCAGGAGTGCGTCCAGCAGGTGGCCACGTGCTGACCGGCTCCACGGGAGGCCCGAGCGCCCGGGGGGTCTCCCCAGGAGGAGCTGGCCACGGTCGGGTTGGGGGAGCGGGCGGGGCCCACCGAGAGGAGAGCAGGAATGTTTCAGGTGTGGCGGGTGTGGCCACGGAAAGCCTGGAGGTGGAAGGATGAGTCATCCCGGGTGGGTCCGCCCGCCCGGCGGGGGAAGAGTCTTGGGCGTCCTGACGAGGGCTCCCCGGTGACCCGGGGCGAGTCGCCCCTGTGCGGCCCGAGGGGAGGACCCCAGGTGCTTTCGTCTGCGGCATGGGTCTCCCCCAATTGCTGACCCAAATGAGGCTTCTGTGCGGGCAAAACGGCTGACGATGCTGACCCCACGGGGAAGGCGGACCTTTGCCCTCTGACCCCAGACTTCTGGGGGTGGGCAGACACCTCGTGGCAGACACATGTTGGACAGAGAGGCTCACGGCCCTTCCTGAGAGGACTGTGGGTGCCGTGCTCCCCGGGAGGTGGGGTGAATGTGGAGTGAGCGGTGCTGGGACCCTTCTTCCTACCCCCCTCCAGGGCTACAGCTGTGGGCACTCTGGCTCCAGTCTCTCCCCAGTTCACGGACCAATCAGGGTCCTCTCTGGGCGAGGGGGGACCTGGCCGAGTAGAGTGAAGGACCCCAGTGTCCTGCTGCAGGTGCGGGCTGGGCGGGGGCCCCATACCTCACCGTGCCCAGCACTGAGACAACAGCAGCCTGGGGAGCAGGGACCAGGTGGGGGTCATTGTGAAAGGCTTCCTAGGAGTGGTGTCCAGAAAGGTCAAGGGGCCAGTGGAGAAGCCAGCAGAGCTGTTCCATCACCCTCAGGGAGAAGCCCCATGTTCTTCCTGCTGCACTTGACTCAGAGGGTGGTGCTTACCAACCAGACCCCCGCCCCAAGTCAGGAGAGGGAGCCCTTGCTTCTGCTGTGGGAGCAGGGCTCACAAACGGCTCACCTCCCACCTGCATCCCTTTGAGTATCTGGCACACTGCAAGCTGTGATTGCAAGTGTGTGAGGTCTCTGGACTCCCCTCCCTCGAAACCACAGCCCACAAGCAGCTGCCTTCTGCCTGAGAAGCAGTGCTGGCTGGTGTGATGGCAGCCTTGTTCTCACAAGGAGGCCAAGCCAGGCAGCTCACAGTGGGAGTCAGGAAGTCTGACCCCCAGTCGCAGATGATCTTGGGAAGGTGCCTTCAGGAGCTGCCTGGAAGGGCCTGGAGACCTTGGTCCAACCAGAAGTGAGAGCTGCCACCCACACCTGTCACCACCACAGTCCCCCTGGGTCACAGGAACTGGCCTTGGCTGATAGGGTACTCCAGATCCACTGCAGAGAACTCCCCCTCTGTCATGTGGAGGGAAGTAAGAGGGAGGCGGGCAGGTGCAGGCAGGGGAGGAGATGCTTCAGCTGGTGACGTCACTGCTGACCGCCTCCCTCTCGAGCAGGGAGGGGCCCCGTGGGAGCCTGCCCTCCATGGAGCCTCCTGGGGACGCCTGTCCCAGGACCCCGTGTCTGTCTCCAGCCCAGATTTCCATCCAAAGTGGCTGGCTGGCCCACACCCACCCCTGGGTGAGGAGTTCCTGCCCTGTGGGACCCTGGTCTGTTCCCCCCGCCCCACCCAGAAGGGCTGCAGGAGTGGGCTGGACAGAGGGGAGGTGGGCAGCACGCCGGCTGTCGGCTGGCTCCCCTGGGTGTCCATGTCCGCAAGATTGCCTCCAGGCTCCTCCTGATGAAGGTCACCTTTCAGAGGGGCGGCTTCCTGAGAAGGTAAGAAGTGCAGCTGCCTGGTCATCAGGGAGCTTGGAGTGAGTCAGAGCCTCAGGGGAGCCCCTTTGGGAGTCAGGCCTGGGCCCAGGGCACCCTGGAACGGGCACACCTCTGGAGGGACCCTGAGGCTGGCAGCCAAGGAGACGATGATGCCCAAGCCTTGGGTGCCCAAGGCTTCCTTGCTGAAGCCTGTCTCTAGAGACAAGAAGGCTGGCTTCCCTGAATGCCACAGTGAGAGTTGTTATGATCACACAGTCTTGGGACCTGGAGGTGCAGAGAACCCACCCCTTCTTTCTCCAGAAGAGGAAGGCTAGGCCCAGTGCAAGTGCGTGCCAAGTCTCTTTAGTCGTGCCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCGAGAATACTGAAGTGGTTTGTCATTTCCTTCTCCAGAGGATCTTCCCCACTCAGGAACTGAACCTGCGTGTCCTGTGCCTCCTGCGCTGGCAGGTGGATTCTTTACCACAGCCACCTGGGGAGCCCCCACCGAGGTCCAGAGCCAGGACCAGTTTCAACACCTCTAGGCTGCAGGGCAGGGGTCTCTGCCACAGCCAGTGGCCCCAGCAGCCCTCCGTGGTGGGGGCCTGGGGAGTCAGGGGCAGGGTCCCTCCTACGAGCTGTCAGGGTCACCTGGCTCTAGACAGAGGAGGTGGCCCGAGGCGGGGATGCCAGCCATGTTGCAAAGCTGCCCCTGCTCTGCGTTCTTTCCCCGCTCGGGGGCTCAGTGCCCACCCCCAGAGGTGTGGGGGCCTGTGGAGCACAGCCCCGGGGGGGAGCGGACTGAGCCAGACACTGCCCCTGGAGCTGAACTCAGGCCCTTGGCCGGGACCCGCCTTCCCCAGGGCCGTCACTTAATGAGGTTGGGGGCCAGCCTTGCTCCCGACGCCCAGGCCACAGCTCCCGGTCCAGGAAATGGGGCGCCAGACGGGATGCGGCCCAGGGTCCAGACCCAGGACAGCCCCTCGGGCGGAGCTTGCTCCCAGGTTTTGAGCTTGGGTTCACTGACGGTTACGATTCTGCGATTCTGCGTCTGCAGCCGAGGCTTAGCACAAGACAGAGCGTGAGCGGAGCCCCAGGCTGGTCCCAGCCAGCCTCCAGGCAGCGGGCAGAGCCGGGCATCCTGAGCCGCCCCCGCCCCGCCCTGCAGAGCCAGGCATCCTGAGGACCCCCCCCCCCACGCCCCCCTGCCATGCAGAGCCGGAAGTCCTGAGGCTCCCCCCATGCCATGCAGAGCCGGGCATCCTGAGGGCCCACCCCCTGCTGTGCAGAGCCAGAGGTCCTGAGGCCCCCCCACTTCCGGTGAAGGGGCTGCGTGCCCAGGCCGCCCTCTGCGAGCTGAAGCCACTTTGCCCCTAATAACCGTGATGACACTCTGTCCTCCTGCGGACCCTGTCATCTGCGGGCCCACACGCTCTGGGAAAACAGTAATTACTCCTTCCTGGTCCTTTGAGGTCGGTGGCTGCTCCCCCTTCAGCGGCGGGGGCACCTGGGAGAGGAGGGAGGCCCCTTGCCCCATCTGGGTCGGGAACCAGAGTCTGCCGGGTGCGGGCCGCATCTTTGGGCACTGCCCCGTGGCCCTGAGCGGAGCCTCTGGGCCCAGCATGTCCACCTCCTGGCTGTTTCCCCTGAGCGGGAAGGCCTTCCTCGTGGAGCGAGGGGTCCTGCTTCCCTGGACCGGGGCGGCAGGGGCCCGAGGCCCCCCAGGCCAGCTCCTGACCTGTTGGTGCCAGCCCACCGCAGGTAGACCCCAGAAGAGGGCTGCCCGGGGCCCTCAGAGCTGAGCCTGCAGCCATGCGACTGTGCAGGAGGCGGGCAGAGGAGGAGAGGCGGGCACAGGGCTGCTCCCTGTCCTGCTGGTCTCCTCTGCGGGCGCCGATGCCTGGGGGACGAGGGCTGGGGGCAGCACGGGGCCGGCACCGTCCTAACCCCTGTCCTTGTCCCCAAG
Seq C2 exon
GCTCCATGTACGACGGCCTGGCCGACAGCTACAACAACTACGGGACCAGCAGCCGGAGCAGCTTCTACTCCAAGTTCCAGGCGGGGAGCGGCTCGTGGGGCTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046350:ENSBTAT00000063780:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development