MmuINT0120880 @ mm10
Intron Retention
Gene
ENSMUSG00000026413 | Pkp1
Description
plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
Coordinates
chr1:135908876-135919207:-
Coord C1 exon
chr1:135918811-135919207
Coord A exon
chr1:135908983-135918810
Coord C2 exon
chr1:135908876-135908982
Length
9828 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CGTCCTTCTCTGCCCTGCAGGTT
3' ss Score
12.27
Exon sequences
Seq C1 exon
CAGTGCCTACTGAGGGACGAGCCGGGGCGGAGGCGCCAGGAGCAGCAGCCGGGAGCCCTCACGCGGACCAGCGCTCTATGGCCAAAGGGAGCCGCTGAGAGGAGAACAGGCGCTCGCTCGCACCCCGGCTCGCACTCTCGCTCCCCTGGCCCGCACTCGCACCCTCGGCTCCCCTGGCCCGCGCCTCCCGCCACCATGAACCACTCTCCGCTCAAGACCGCGCTGGCGTACGAATGCTTCCAGGACCAGGACAACTCCACGCTGGCTTTGCCCTCTGACCAAAAGATGAAGACCGGCACGTCGGGCAGGCAGCGCGTGCAGGAGCAAGTGATGATGACCGTCAAACGGCAGAAGTCCAAGTCTTCCCAGTCGTCCACCTTGAGTCACTCCAACCGAG
Seq A exon
GTAAAGGCGCGCGGGCTGCGCGCGGAGCCCTTGGGACGGTGCGTCCCTCCCGATGCGCTTCCGTCGCCCCGTTGGGGACTGAATGTCAGCCCGCTTTGACGGAGTCTGTGAAGAGTGCCCACATCTCAGCAGTCAGGCCATTGCCACAGGGTGGACCCGGCCGCCCCCAGCTAGCCTGCTGCTGGGGATTGATGGCACGCTGTGGGTCAGGATGGGTAGCTCACTGGGGGACACAGCTGGGATTAACTCCTGAATCCAGATGGCTCTCTTTTCCCAGTCCTGCTTCAGGGGCACCAGCCTCCGATTATCTTCAAGTGTCTGTCCTAAAGTTTCAGACCCGGGTGCTCTCGCCTACCTCTCCCCACATCCTCTCATTCATGTTCCTCAGGCTTTGCAATCGTCAAAACCGGCTTGCGCCCAATAGGAGAGAGACAATAACCCTAGTGAAGGTGGTGTTTGAAGGAGGAAAGGGAGCGACTCAATTACTGTGATGGAGTTTGGTTCAGGAGAGGCATTATGGAATTGGGGGGGGGGTCAGGGAGCGCCCCCTACACACACACACACACACACACACACACACACACACACACACACACACACACACGTCCCTGGGATCCCTTGATATTTTACATAGAGTCTCTAACCAAACCAAAGATGCAAATCTGACTAGAAGACTATCATGGGGCCAGTTCTCTGTTAACAAGGAAGGAGGTGTGAGTGCTCACTCTCTTTCTCTAATCCTTAATACAGAGCCCCCTTCCCCTGACCCACCTTAAGTAGAAAATAGTGTCAAACCGGAACCAAAATGGATTGGGGGGGCACCACTCCCAGTCTCAACTGAGCCCTCTTCACAGTGAGTTTGGGCTTCCAGTCCTGTCCTCCCCGATGGCCCTGATGTGTGAGTGACAAGCCTCAGTTTGGGGGAGGCCAGGAGAAAGGGACCAGGTCCCTGAAGCTGAAGGTGGAAAGTGCACCTGACAAGGTGTTACAGGTGGGAATTTTAGAGTGAAATTTTCATACAAAGGATTCCCAGTAAGAAATATGCTAACCTTTGTTTAACAAATATCATTAGCAAAACTTGAACGTATTTGTTTTTATTATTTAACTAGATGGAGTAAAATGCTAATAAAAGTCCAGGTCAAACATGCTTATAGAGACCTGGTTGGGGGAGGGGGAGGGCGATGGGTAAAGGGACAAGGAAAAAACAAAGGAAGTAGACTTCTGCCACCCCTCCAGCGAGTCAGCAGGCCCACACTCTCTGCCCCTGGCATGTGTCCTCTTTCCTCTGTTCCCTAGTGATCCCTTGGTAGAACTAAGGAAGAGAAAATGGCTGTTGGCACACTCTGCCACCTCCCACACCAAAAAAGCTCTGCTGCTCCCGGTGCCCTTTGCCCCTGTCTGGGCGCCTGGCACCTCTCCTAACAGATGCGCACTCCCTTGCCTAACTCCCCTTTTATTTACCGCCTTTGTCACTGCTTCATTTGAAAGCAGGTTTGCAGTGACAAAGGGCCTCCTGGAGCCACAGCTCAGGGCACAGCTTAAGGCCACCCACTCCTCTCTGCTTAATGCCTGACCTTGTCCCTTTCCACCCCCCACCCCCCTCTTCACACCCCCTCCCCCCTGCTCTACCTGTCTCAGCTTCCAGATCCTAGAGCCAGGAAAATCTCAAACCTGGGTTCAGGGCCCAAACATCCCTTCTCCCTAACCTATCAGGGCGTTCCCTGACATCTGTCATCTCAAAGTGCTGCTTCTAGCTTGGGCTTTGTGGGTAGCCATCTGATGATGTCTCTACCAAAGGTCCCCCAAGGGGATTCATCCAGGTGAAGGCTTAGGGCTGACCCTGATGCCTCCCAGTGCATACTTGTCCAGAAACTCTCCTGGGACTGGCCCTGTGGGTGTGTCTGCTCTAACCTCAGCCTCTGGGGAGGTTCCCAAAGGGGGCCAGTTCTCCCAGCTGGAATAGGCGGTTGGGGCACTTGGAGCTGGTGTGGCTGGTTTATCTGGCTTTGTTTTCGTCAGATTTCTCTGTCCTCTTCATCTGAAACGCCCAAGTGTGTGTCTGCTGCACAGCCATTCTGCACTCTCTTTCTCCTGGTGATTTCCATGCCAGGAGCCTGCTTTCCATGTTGGCAGAGATCAGTTGGCAGCCATGGAAGGTCTCTGCTCCCTGGACAGTTGAATTCTCACATAATCTTCTCCTGGAACAGAACACCGGTTTCAGTAGGGTCTGGAGCTCCATGCCTCATACCCAGAGCCTCTTTGTTAGAACCCACACTCTAAAGAAAGCTGGCCCCACCCAAGGGGTTGCTCGGCAAAATGGCCACTGTTCCTTGTGCCCCGGGTGAACAGCCAGGCAAAACTTACCAATAACCCTGGTGCTTAGAAGAGGCTTTTTTCCCTCAGACCCTCGTCCGTCAGGCCCACCCTTACCACCTTCTTCTCTTTAGGAAGGGAATTTTGAGCTGTTAAGGGCTGGATACGGAAGCTAGCACCATTTTAATGTATGTATCTACTTATTCTCTCCTTATTGGTGGTAGGCCAGATCTTTCAACTTGGTCATGAAGTCCCCAAGAGGGCTATAGACCATGCAGAGGGAGATTGCTATCTATTCAAGGGATGTCCATGAAGTAGCTCTCCTATGTGCTCAGGGTGTCCCTTTGTGTGTCAGAGTGTCAGGTATATGTCTTCCTGATGATGTGGGAAATAAGAAGCAACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATCTGTTTAGCAAGAGATCTTTGCTGGGGAGTATTGATGTTTCTAAGGGTGGGAAAGACTCCTGTGGTTATTGATAACAAGCTGTCTTGTGAAGGTGAAGAGCTGACAGTCTCCTTTCAGATGTGTACACTGCATCTGGAATCTCTCCCTTCAACTTATCCCATATCTCGTTTGATTCAAGCACAACAACGGCCACCACGACACGCAGATCACACACAAAGTTTCGTAAAAGGAGCTTTCTTCCAAAGTATCTACCATGACCAGCATTTTACCCGCATGGTGCTGGCTTCTTAACGAACTGTCTGTGTGCGTCTAAATCCCCATCTCGGGCCAGAACTTCTTCCTTCTCCCTTCAGTGGGTATTTCCCACTAAAGCACAGAACCTTTATTCCTCTGTGAGCAGAGACTGGATTTTGGCTGGATTTGAGGAGGTGCCTGCTCACCCTCCAAGCTTCCCGCCTGTTCAGGCTCTGCAGTCTCATGCCCGCTCCTGCGTGCCCTGTAAGGGCAGTCTTGGGCGGCCCTGCCTTTGGTGACTTGCGTGTTTGTATCTGTCTGTGTCTCAGCATGAACCCCTGCCAGAGGAAGGTTCTGCTCATTCCATCCTTGAAAGCTGCCCTGTCCTGGCCACGGACTGTGGGTAGACACCACTGTGGGGTTGTTTTCTCAGGCACCAAGCTGAGATGAGAGATGCTAAAGGGCATTTGTGTTTAAGCTTGTTCCAGAGGCAAAACATACTAATTAAACTTCAAATGAACCAATTCTGTTTCTTTACCATGTATCTTGGCTTGAAGTTGGGGTTTTAGCCAATATTTCTGTTGACCTGTTACAACACATGCAAAAATGTGGAGTATCTCAGGGCGTTTCGTAGCAAGTGCTGCTTGTTTTCCTGGATCCTGTCCTCTGCTTAGCTCCCTGGCAGAGTTTGTAAAACTATATTGGAGGGTAGAATATGGGATCGGTGGCCACACTGCCAGGTAACCCTGTGGGGGGCTGCCCGCCCAAATTGCAAATACTAGCATGCCATTTATTCTAGGCTTAAGAATCTGAAAAGTGCTTCTGTGATGGGGTATGGCATGTGTGTTATATACATGTACATACATTCTTCACATGGATATATATGTTGTAGACATATAGTTACTCTATACACATGGACATGTACAATTACATATATACACATACTACAATACACATGAATATAGACATATATGCACATACATATATATGCACATTTGACAATACTCATACACGATGTATATATATATATATATATATATATATATATATATACACACACATACATACAAACACTGCACACATGAACTTGCGTGTAAACATTTAGCAATGCATATATGTGTGAATACATGTATTTTACATTATGAATATATCTCCCCATATGAATACATGCATTTGCTACACATATCTATTCACAGATACACACACAACACATCTCGTGCGTGCACATGTACAAATACACACTAGCACATAGCATAGGCATGTACACACACCACCCCTTGAGCCTGCACTGTGGCAAGAGCCCAGCTTGGCTGTTACTACTCTCTTCTATGCAGTCTCCGACAAGTCAATACCTTTCTCTGGGTCTCTGCAGCTGTGAATTAGGTAAGAGCATATCAAAAGTGCTTTGTGCCCTTTGGAAATAGATTTATTATCCTCTCCCTCTGTAAAGACTTTGCCTAATCTGCCTGTGGCTGTCTTTCAAAATGGCTGAAGACTTCCTAACTGTTTCGTCTCTCTAGTAAATATCCTAGCTAGCCTACAAAAATTAAAGTTCTCGTCACCTAATCGCAAATTTAGGTGAAGGTTCTAAAAAATCCCATTTTTAGAAAACAAGTACCTAGGCCCCACTGTCTGCGGTTCTGATTTAGTCAGTCTGAAAGCTGGCACTCTAAAACCTTCATTCGCTGACTCTGCCATATATCAAAGTTCAGAATTATGATCCCAGTCCCCACCCTGCACTCATGTCGGACCAGCCCAAGGACTGTACCTGACATGCCATTCACTCATTCTTGCTCCCCTAGAGGAGTGGTTCCTACGTGATGGGTTTTACTCCTGACCACTGCTGAGTTCCCCTCTAGCCCTTTCCTATGCTTACCCACCACACTATCTATACCAGGTCTGTTCCACAACACGGGTCTGGGCTCTACCCAAGCTGTGGGTTCAGTTGAAGCCACACAGGTCCTATCAGATAGAACAGGCACCATCAGAGCTGGCTTTAACCATTGCTCAGCAAAGTCTGCAGGAGCCTTGTGAGGCTGAGGAGAGGGTGCCTAATGAGGGCAGCATGGTGTGCTTGGGCCTTTCTGTTGTATGCATATGCCCAGGAAGAAGCCAAGAACCACGGCAGAGAGTGCGTGATGCAGTTGTACTGAACTCTTCGACCTCCCTGGGATCCTGGGGATGCCAGAGGAGGAGGAGCATTGGTCGTGCTCCCTGTGACCTGGGAGAGGTTCAGAGAGCAGAGTAACACAAGCCTTCCTGGGATCCTCGATCATCTGTTCACACAGGGAGAGTGGGGTTCCTTCCCACTCTCGAGTATCTCTTAGGGGTAGTGTCTCAAGTATGTCTTCCAGGACGTTCTCTCTATTGCCTCATTTAAATTCCTCTTGCTGTGTCTGCTTGTGGGTACCATAAGATGAAGAGAGCTCTGGGGCAGGGGTGGGTAAGGACCTTTTCAAAGCTGAAAGATTATAGGCTTCTTTCTCAAGACCTTTATAGTGAGGAAGAGATGAGCTTGATTTAGGCATAGAAGTAAGAAGATGTGTCAGCCTTACAGGAGATAGATAGAGACTTCCAGAGAGGCTTCCTTCTGACAAGTCCGCCTTAGCGAAGGAGAGAGGTTTGGGAGAAGGGAAATGGAGGCGTTTCAGGTGCCGTCTACCCTGAGGGCTGCCTGTTAAGTCAGGCAGGCCTTGTCCTGGGGACCTTTGTGACATAGAAGCTTATCCTGGGGACGGAGGTGAGGTGCCTCTAGTTTAAGTACAAAATCCCTTGCTTAGAGAGCCCCCAGCTTTCTGGAAGAAGAGCATGAATAGGTGCACAGACAGATAGACACACAGACACACAGACACATAGACACACATGCACACGCACACAGTCTTACAGACCCCTCACTCCAAGAAATGTACCAGCCAACATAGAGTAAGTGCAGCCATTGGACCCAGGTCTCATGCTGTTGTGATGGAGGTTTGGAGTATTAAAAGCTGTGTGGGTAAAAAATAAAAATAAATAAATTTTTAAAATAATAAAATTATGTGTGTGTTTATACACACACACACACATACACACATATTTATACAAAGAGAGAGATAGGTGGAAACATCTGTAGCTTATTTTTGTGCAGAGTATTAAATGCAGACAGGGGGTTGGTTGGTTGGTTGGTTGGTTGAGAAGAGAAAGAATGCTTCAAGTGCTGTGGGTGTGACTGTTTGAAAGCTTGAAAGGGGAAAGGGCTGAGTTGCCCCTCCCATGCTTACCTGCCTTTCAAAGATTCTCTAGCCCGAAAAGCTTGGGTTGCCCATATGACACACGAAAGCCAGCCAGTTTCCTCTAAGGCACAGAACAGAAGATGAACACGGGGAAGGGGGGGGGGGGACCTGCACAGGAGCACAGTACACTGTCTGACACGGTTCCACCTAGTGGAATTCTACGCTGACAGGGGCTGAGACAGAGAGCTCATGCTGCTTGTGGATCAGGGGAACTCTTTGATATTCTAAGTCGTTGGGTTCTGTGTGTAGGCAGCTGTGTCCTGATGATGTTGCCCACGTGGAGATGGCTGACAGCCATCTAAGAAGCCAACATCATTTTGTTCATGGCAAGCGAACCCATGTAGAGAAGAGTGGGCGGGCAGACGCTTGTCAGGGTGGACAGTATGATTCTGAGGGGTAACTCTACATTCAGTTGTCCTCCTTTACCTCCACACCCAGGATAAAGGACCTTTCTAAAGGACACGGACTTGGGCATTTGTAATTTTATACAGCCTCCTCTCTTGTTCCAGCTAACACTACCCTCAAAGAACATTTGGGGTAGAGGAGGCCCTGGTTGATAGAATTCTAAGACTCTAATCTCATTTGGCATGAAATGGGGGTCTTGAGCCTCTAGGTACCAGAGTACCTTTTCCCACAGGACTGGCTGACTGGACAGGGGAGGAAAAGTGGCCCCAAAATGTTCAGCTCAGGCCAGTTTGGCCAAGCCACAAAGAGAGCAGTGTCTTGTATGTAGGATCCCTAGGAAAACAGAGCTAAGATTCTGGCCTTGTAAAGGTACCCGGAGTGTCCAGTCCTAGAGATAGTAGTGGCATGAGCTGTATAGGCAGCAGATGCGAGTACGGGTAGCCAAGATAGGCTTCCCAGGCGTGAGTTTTGTAGAAGTGGAGAGAGACCAGGAGGAGAGTAAGCCATCTGCTTGCAGAGGAGCACTGCATTCTTGCTGTGGAACTCATTCTCTAGGGGGCAGAGCTTGCCATCCAGGCACCCTGGAGTCAGGAGAGAAGGCTGCCTCCCTCCCTCTCATGGGGATCCAGGCAGCTCCCTAATTGCAGATAGGTTTTGAAGGGTGCCTTCCGGGGTTGCCTGAAAGGAACAAGCATTTGCGGATTATACGCAGAGCAGGGGTTTCACCTGAGCCACTTGGAGGCATGAGGACTAGCTCTGGAGAGAAGAGAGCACCATATCCTCTGCTTCCATCTGTCTGTGTGTCCACACGTCCGTTTCTGCCTCTGTGGCATGGCTCCTACTTCGCCTGGAGGATGTATAAGAGGACAGCCAGGCTGGGGAAGGGTATGGGAAGGCGAGGAGCTTCATATGACCTACAGGGATCAGGTCACGCTGGTAGATACTCTCTCGCTGGGGTGGAGGCCTGGGTGGGAGCCTCCAGGAGACTATTCTTAAAGTAGGAGGCCTCCCTGGGGCTTTGTTGAAGTATCTGTCACCACCCCAGAGTTTCCATCTGGAAGTAGCTGGCTGACCCTTACCTGCCCTTTGGGGAGAAATGCCTGCTCAAGAGATGAAAGCCAAGCAGACACTGGCCTGCCAAGCTTTGGAGGAGATGACAGACACAGACTGGATCAAGGCGGGTGAGACCTGGACGTCAGCTCCTTGGAGTCCTGATTGCATCTGTGCCTGGCTGGGACCCCCTTCTCTAGTGACCAAGTCCTTAGGCTCCCTCCTGTTCCTTATGGTGACACGGTTTGTCTGAAGGAGCAGCTGCACTTTGGACGGGGTCAGGAGCAAACCTGCAGAGGGCTGGGAGTGAGTCAGAGGCTTTGTGGACCGGGCAGAATCCTAGGATTTCATTTTTAGGGGAAGGCATGGACCTGGGTCCTATGGGGTGGGATTTTGGGGACTCTATGGACAGAAAGCCTCTGGGACAATCCTGAGGTAGGAGGCAGAGAAGGCAGGATCAGTCTCAGTTGTCAGCCCATGAAAGCTGAGCCTTATCTTAGAGAAGTTTCTCTGGATGTATCAGGCATATGTCACTATAATTCTGTAGCCATGAAGCTCTCAAAGTGTATAGACCATTTAGGATACAGAGAAGGAGACTTTTTTCCTGTAAGGAAAAAGAAGCTGAGGCCCAGAGAGAGCTTATGAACCAGGCCAGGACCAATTTTAGCATATTTAGGCTTCTGGGGAAAACTGCCACCACCAATATTCCTGTCCTGTCCACCCTCTAAAAAGAGGAATTGGAGTCAAGGGAAATCCCTTTGTTATGGATCTCGAGCTGGGACAGAGGAGGTGGCCGCAGGCAGGATGCTGACCCAATTCTTAACTGTCTCTCTTGTTCTTGTTCCCAATTCAGACCATCTAGTTCCCCGAAAACGACCTAGAGCTAGGTGGCATGGCAGAAGTGGAAGGGTTAATGTCAAGGGATGTCAAGGTCCAGCCCTCCTCCTTAGACAGGGTTTCTGATGGGGGATCCCAAATATCACCTTAGAGGGAAAGAATGCGCACCCCTCTCAGAAGGCGCTCACCTGCCTGCTCGCCTTTACTCCCAGAGGCTACATTTAATGAGTGTGAGCAAGCCTTGCTATGGATACGATGGCCAGAGAACCATGGGCTTGTCTGTCTTGGAACTTCCAAGGCAGCCAAGGAAGCAGGACACCAGGTGGCTCAGTGACTTCAGGTACAGCACAGGACATAGCAGAGATTAGAGTGATTTGCTCTGAGCAAGGTTGCTCAGTGGGGGTTTTCCTGAAGAAACCCTTGCCTTGACCCTGGCTTTGAGAGATTCGTCACAGGGGAACGCTATGTCGCTGCAACTGATGTTTCATGACACTAGGATCTCAAACAGACCAGCTTGCTTGAGGTTGAGGCTGTGTTGTAACCCCTCCCCCTTCCTGCTATTCTGAGAAAGAGAGAAGGAAGATGGGTTCCTACTCAAACCCCAGATCCAGCCTGCTTGCTGTGATTCAAAGCCACTTCGCTGCTAATAACCCTAATGACACTCTGTCCTCCCGCAGAGCCTGTCATTTGTGGGTCTCCAAGCACTGTGAAAACATTAATTAATCCTCACTGGCCCTTTGAGGTTGATCATTGTTCCGCGATTACCAGCCAGGGGACCTCAGAGGAGAAGGAAGGGGCAGGTTACCCGATCATCTGTGGGGGCTGGGCTCAGGTTTGAATTCACAGTCCTGACAGAAGCGGACTCTAAACAGTTTGCACTGCTGTGAGGCTCTGACCTTGAAGCTCTGAACCTGGAATGTCGAGATCTTGCCTTCCTTCCCCAAGTGGGCATCTCCTCTTTGTGGAGCATGGACTTGTGATTCCCTGGGCTGTCCTCCAAGGCTCTCCAGGACAGCTCCTGACCTGTAGGTGTCAATGTCTCCCATGGGGGTCTAAGAGCAAGCTGGCGGTTCTTTGGTGAGCCCTGGCTATGGTGGATATGGAAAGAGGTGGCATGGCCATCAGATGATGAGCCAGTCTCCATCCTTCAGCAGGAACTCAGACAGTTTCCCTCCACAGAAGTTGTGGACCTGGCTGTGTGTGCAGGGAGCACGGGAGCAGGGATGGATGATGGTCATCCCTGTCCTAATCGTCCTTCTCTGCCCTGCAG
Seq C2 exon
GTTCCATGTATGATGGGCTGGCTGACAATTACAACAACTACGGCACCACGAGCAGAAGCAGCTACTTCTCCAAGTTCCAGGCAGGGAATGGCTCGTGGGGATATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026413:ENSMUST00000027667:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types