GgaINT0142227 @ galGal3
Intron Retention
Gene
ENSGALG00000000299 | PKP1
Description
NA
Coordinates
chr26:834413-840982:-
Coord C1 exon
chr26:840781-840982
Coord A exon
chr26:834514-840780
Coord C2 exon
chr26:834413-834513
Length
6267 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
AGTGCTTTTTTCATTCACAGGTT
3' ss Score
10
Exon sequences
Seq C1 exon
ATGCTTCACTCTCCGCTGAAAACAGCGTTGGCATATGAGTGCTTCCAAGACCAGGCCAGCTCCACGCTGGCCCTGCCCTCGGATCACAAGCTGAAAACCAAGGGCACGGGAAAGCAGCGGGTCCAGGAGCAGGTGATGATGACGGTGAAGCGGCAGAAGCAGAAGTCGTCGGTGTCGTCGAGCGTGGGGCACTCCAACCGAG
Seq A exon
GTACCGTCCCCACTGGGGTCGGGGCAGCTGCTGTGGGTGCCCCTCCTGTGAGCTTCTGTGGGGTTTGGTTCGTAGGGGACAGAGCGGTTCGTTCCTCTCGTGGGGTACCCAGCTGGGGGATGCCGGGGTCCCTTGGATGGGATGGAAGAGCTGTGGTGTGCAGATGGATGCAGTGCCTGAGTACAGTGGGGCTGAACTGCTCCATGTCCCCATGGCTCTGGGATGTGTTGGTACGCTGTTCTTATCCCTGTTCTCCCCGGCTTCAAAGCTGGAGCAGCTGCCTACAGCTCTGCTTACTGCTCCTCTGCAAGAGTCCTGTCCTGCAGCTTTGCCCCTCCTTGTATGCAGACAGAGCTTCCAGCATCGCGGCAAAGCCTGCACACAGGACACAGACCTGAGCTTGGGATGTGCTCCCAGAGCTCCCGGTGTGTCCCCGTTTGCAGGCTGGCAGCGGTGCAGTGGATGCTCTGCAGCCCCCTCTGTTCTGAGGTGAGCAGATCAGGGTGCAGACACCGTGCAGCTGCTCCACCTCTGTGCACGAGGCTTGTGCAAGGGCTCAGCTGTGTCCTGGAACCAGGTTTCCTATAGGAACACCTTTCTCTGTGTCTCCAAGCTTGGCAAAGGATTTTCTTCACCATTCTCCCGTCTGAAGAAAGCTGACTTGGGGGGCAGCCTGACTTTCACCAGTCGGGAGCTGCAAACTCAGACAGGCACAGCAGCCACAGCACAAAACCCCCCTGACTCAGAGCTGCTTTCACCAGCAGCTGCGGTGAGCTCACTGCTCCAGCTGGGGAAATGGGAAGAGCAAAGCCTGGGGCCTTGGGGTACAGGGGCAGCTGGAGCTGAGTCCTTCAGCTCACCCAGGACATGGGGATGTGTTTGCAGAGGTGAGCTGGGGATGATGAGTTGGCAGCAGGAGGATCAGGAGGCAGAACCCAGCGCCGGGGAGGTGTCGCACTCCAGACACAATTGGGGCTGATTTGCCAGGAGAATGGTTTGCCAAGGCAGTGCTCCCATAGGAGCCCTCCTGGATGCATGCACTGTGATTGCAGCGATAGAGGGAATGGGGAAGCTCTGCGGGGCATCTCCTGCTGCTGCAGATAGGAGGAATGAAGGACAGGAGGCAGAGGGGGATTGTTCTGCTCAGAGAGGAGCCCAGGTGAAAACTTTGGGAAAGAAAGAAAGCAAAGCAAATTCCCAAACTGCCCATCTCTGCTCAACAACCTCAACCTAAACCCCTCCTCCAGACACCTTTGGGAACGTCTGGGAATGGGAACTGCGTGGAAATGTGCCGCTCTGCTGTCTGCATCCCAGGGAAGCTGAGTCACATCCCACTCCCAGCAGCTGCCTCCATTCCCATGGCACGTCCAGGTGCCCTCCTGGAGCCCACAGGTGGCTCAACCTGGAAGCTGCGGTGCCAGAGGGGCTCCCAGGAGGACGAGGAGTTCCCATTTATTTCCGTTCTTTCTTATGGAGCCTGAGAGGGTTGGGCTGAGCTTTCAGAGCACAGCATTGAACCATGTTGGTTTTTGCTGCCGCCGGTTCTGAGGCCAGCTGAGCAGAGCTGGGGAGAAGAGTCAGTGTTTCTTGCAAAGAGCTGCAAGGAGCCGTTGGGATCTGTTAGCAGCTCTGGTCATCTGTGTCCAAATGCTCCTCCAGCATCAGCTACATGCATCCACGTGTGATTGCTCAGAGATGCTTCCCGCATAAGGTGGGGAGTTGGCAAAACATCCTGATAAGCCTTTGAGTGCTGTTCCTCCTGCATGCAGTTCCCTGTGTGTCTCTGGTTGGGTATCAACCCGGGTCACTGCGTTTGGAGACGTGGTTTGAGCAGGAGAGCAGAGCAGAGCCTTCTGCTGCCTCAGGAATGCATGCACCCGTCTGTAGGGTGGGGAGCACAGGCATGCATCCCACTGCATGCAGCAGGGATGGGAGGTGTTGCATACCACAGTTGGTGTTTCTGTGGAGCAGATGTTCCCTTAACATCCTGCTATCAGTGCCTACCTAAAATCCATTGGCTAACTGGAGAGCGAGGAGTTGTGGCCGTTGTCTGAAGGTCCTGATGTCACCCAATGCATGCACAACCACAGGGCACGGAGCAGCCCCAGCAGGGCAGCGTGACCCAAACTGGTGTGTGCCGGGCTGCTGCTTTGTGTCTGGGAATAATGCAGATTTCCAGGGGAAAATGAACGCGGTGTCACAGCAGGGGAAAAGGGCAAACCAAGCTGAACTGAGTCCTCCTGGCCATCCCAACCTAATGGGGTCATTATGTTGATGTACACAAAGAGGGCTTTGCAGACGTGAAGTGTTGGGAAGACTTCTGCCACCTTCCCCCACTGTGAGATGATTCAGTGAGAGCTCTTCCAACGAACCTTTCCGATTATTGAGCACAGCAAAAATCCAACCCCTCAGCCCATAGGCCAGAAGGCAGAAACGCCATCTGGTCACTCCTGCATGAATCTCAGCTTCTGGGGTTCCTCCAACACTTCTCTCCTAGGAGGCATCGTGCTTTGTGCGTCCCACAGGCCCTCTTCTCTTACTACTTTTTTCCTATGTTTAATCATCCTCATTGTTTTAAAGCTGTGCATGGTTTATTATTGAACCTGTCTAGCCTGCACTGCCAGTGACGGGTTCTTGTCTTGCCTTTCCCTGCCACTGATTAATGTTTATTAATATGCCTCCATTGCCACAAAGCTCCCTGTTAGCTTCATGCGTCCGGCCGAAGTCTTCTGCTGCTGTGCTCAACAAATGGCTCTTCCAACATAACTCTTCTCAGTGTCAGTCCTTTAGCTTTAAAAGGGTATAAAGTTGCCTTTGGAGAATGCAGATAACTCATCAGGAGGGTCCTAAAGCTCAGGCACAGCGTGTTGCAGCAAGGTCTCACCTTGCCCTGCGATGATCACTAATAGATGACTGATGACAGAGAGGAGGGCACGGATGGTGTGTTGTGGTGCTCGCAGCATTTAAGTGAAAGCTCTTCAAGGCATAGAATCATGGAATGGTTGGGTTGGAGGGGTCCTCACAGCCCCCACAGCCCCACCCCTGCCATGGGCTGGCTGCCCACCAGCTCAGGCTGCCCCAATCCCCATCCGTGGCCTTGGACACCTCCAGCGTTGGGGCACCCACAGCTCTCTGGGCAACCTCTCGCATTCCATAGCTGCTGTGGTTAGTTTTCATGCCCATGAGCTCTCTCCCTGGTTTAATGGAGGTTTTAGATTGATGAGTTTTCTCTGCAGATTGTTTGTTTTTGTCCCAACGCTGCAGGACTGGTGACCATCTCATGCAGTCTTTCTCCTTGAGGCAGTTGAGCGGAGGAATATCCCTGCTCTCCCCTCGGGCTCCTTGCACACATCCCAGCTGCCCCTCGGGAAGAATCAGGCAGAGAGCTGTGTAAACTTGCAGGATAAAGCAAAGCCACCTCCACCATAAAATCATTGGGTTCTACCTGGCCTTCAGACCGAGCAACAAATCACAGTGCTGCGGTGGCAGGGAAGCACCTTCTCCAACCAGCAAGGCAGCTTTGAGCGTTTGAGGTTTTTATAATTATATATTTACAAGCTCTCATATATGAGTTCTTGGAGGTGAAGGCAACTCTTCAGCAACTTTGGGCTTCTCACGACCAGTAGGACCTGGACAGTGTCCAGAGAAAGGCAGTGAAGCTGCGGTGGGTCTGCAGCGCAATGGGGTCTTATAGGGACAGGGAACCGGGATGGTTCGTTCCGGAGGGGGCTCAGAGGAGACCTCATCACTCCCTGCAGCTCCTGAGAGGAGGTTGGGGTGGAGGGGTCGGCCTCTGCTCCAGGTAACAGCGATAGGATGAGAGGCGGTGTCCTCACGTTGTGCCAGGGGAGGATCAGGTTGTGGAATGGGAGACATTTCTTCTCTGAAAGGGTGGTAAAGCACTGACGGGATGCCCGGGGTGGTGGTGGGGTCACCATCCCTGCAGGGGTTCAGGAATGTCGATGTAGATGTGCACTGCCGTGTAGACGTGGCAATGAGGGACATGGTTTAGTGGGCATGGCTGTGATGGATGGTTGGGCTCGTTGGACTTAGACCTCCTTTCCTACTTGAATGATTCTACGATTGTCTCTTAAATGTCTTAAAACAACAAGTGCCAAAACTGGCTTACCTGTGGTGTCTCCTTGCTCATCCCCCAAGCCTACAGTGCTGTGCATGGAGGGAATGGATGGGAAAAGCAGCGCCGTCCCGGGGAGGATTGGTCGGATTATCCCTGAGTCACACCCAGAAAGGCTTTCTTCCATTTAAGGAAGCTGTTGACTCACAAACAGTGTCCGGAAATTCCAGCCTGCAGATACATTATGGGAGAAGGTCTGTAAGCAGCAATTCCCAGGAAACTGTTATGGGATTGCACTCAGCACTCCCATTGTCAGCTCTGTCCTCCGCTGAGTCACCCGGCCCAGATTTCCCATTCCAGGCTCTGCCCGCCTTCTGCCAAAGCCCAACCCTACACTTCTCCTGTGCTTGGTGGGGCGTCATGGGGTGGTATCCAGCCAATGCATTGACCTCCCTTTGCACGTTGGTGGCCATCTCCTTCACCCTTCCTGGCAAGTCCCATGCAGCTTAAGATATAAGAAGCAATCAGGGCTGGAGAGATAACAATGGGCGTCTTGGAGCAATGCCCTATGGATGCTCCAATGTCTATAAACGTGGTTAAAATTGAGATCCTGTCATTTTCTGCACAAGGATACATTTGTGCAACGGCTCTGCTGCATTCCTGGAGGTCCTTCAGGTGCTGCCATCCATGAGGTGCTGCCATCCATGAGGTGCTGCTCCCGTCGTGTTGACGATGGAAGGGAAATCTCATTACTGCCTCTATGGGGACAATCTTCCTGAGAAAATGCAGGAATTTTCAGCCACGTACCAAATCAACATAACAGGTTCTGGATGCCTCAGGCACAGCAATAAACGAGATACGTTCTACGGGTCGGTGGCTGTAGGAGACCTGAGTGGCTTCAGGGCCTTTGTGGTAGAGCTTATCCAGTTTATCCAAGAGATGAGTCTTATCAAACAATCAGAGAGATTAGGATATTTCTGACGTTACCCACCAGTTTAGGTGCATAACTTGGGACAGGTAAGTCCTGATTCTGTAGCTTGTTAGATATTCAGAGCTTTCCCTGGGAGATAATTGGAGTGCAGGGTTTGCACTTCCTCGTAACGGGACTTGGGACACCACAATTATTGAGCAGTTCTGAAAATGAAATTCAAATGCCTTTGAACTCTTTTGGACCATCTGAAGGGTGTTAAGGTGTAGTGGAAATGCTGAGCCACGGCTTGAAGCAGTGATGGAGCACCTGGTGGGAAGGCAGGGCCAGCCAGGGGAGCTCAGGTGTGTGCAATGTCCCTGAGTGACCAGATGGGGTGGATCCTGGCTCCACCTCTTCCTGGACCTCATTTAAAGGTTGGCAGGGGAGGTAAGGGTGTTTTGTTGGAGGTCCCTGTGCGTTTGAGGCTTTCTGAAGGTAAGCAGCTGCTTTCCTTTGTTTCTGTGTCCATGGCTGTTGCAGTTCAGCAAATTCTTACTTGCTGCAGTGTGGAACTTTGCTGCTCTGCTGTCATTGCTGCACTTTCCTTTGCATTACATAAGGGAATTGCAGCTTAGGAAGAGGATGAATTGCATCTTCTTTTCTTGTAGTGCTGAACACAGCCTGTGTTTGTAATGGTGGAGTCTAACACACTTCTGTGGAGGCACAGTGTAAGTGGTGTGATCTGTTAGAGAGTAGGGATGGGGATTAAAGGCAGTGGTGGCTGCGCTGTCCTTAAGGACACCTGAGGTCAGGCTGGGTGGGGCTCTGGGCACTGTTGGAGCTGTGGGTGTCCATATGCATTGTAGGGAGTGGGACCACACGGCCTTTCAGTGCCCCTTCTAACTCAAACCATTCTGGGATTCCAGAACAACACCCCATTCCTCTCATGTAAGACCTGAGGTACTGGCTGAGATTTCGACCCGCCCCGCTCTTGTCCATGGTAGATCTTATGGCACTTGGTCCTTTCTGCTGAAGACCCTCAGGTGCCACTTGTGGTCTGGGGTTGGATTTTCTAGCAGCTCTTCTGGATCAAACATCATCTTTGGGTTGCCTGCAATGGCAAGGGCTCAACTTACTGCCTTTCTATCTTGTGCTACTTATGGGTTTTCTAACTCCATTATTCTTCAGCGGTAAGTTGAAAGGATCTAAATTCACTGCAAGGAAAAGGCTGGGATGGTCTGCTGCTTCCCACTCCTACTGACAGTGCTTTTTTCATTCACAG
Seq C2 exon
GTTCCATGTACGACTGTGTAGCTGATGGTTATGGCTACGGGACGTCCCGGGGCAGTTATTACACCAAAACCCAAATGGGAAACAGCAGCTGGGGATATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000299:ENSGALT00000031460:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]