BtaINT0112955 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005947 | PLAU
Description
Bos taurus plasminogen activator, urokinase (PLAU), mRNA. [Source:RefSeq mRNA;Acc:NM_174147]
Coordinates
chr28:29965401-29965970:+
Coord C1 exon
chr28:29965401-29965488
Coord A exon
chr28:29965489-29965936
Coord C2 exon
chr28:29965937-29965970
Length
448 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCACTCCCCTTCTCTTCCAGGGC
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGCTTCTGTCTAGAGCCCCAGCCTTGCCACCATGAGGGTCCTGCTGGCATGCCTGCTCGTCTGTGCCCTGGTCGTGAGCGACTCTGAT
Seq A exon
GTGAGTGGCTTCCCTGCTTTGACTCTAGGTGGCGGGAGGCGGCTTGCAAGACCCCGGAACAGCGCAGGGGAAGGAAGGGGCTGCATAGGCAGCCCGAGTCCTCCAAAATTAATCAACAGTAGAGCCAAACAGGGAAAAAGGACAGGTGTGGCATTGGGGCCTTGAGAACTGGGGAGCTTGCACTTGCTGGCAAGGGAAGAAGAAGCCGCAGGGACTGCCCCAACCTGCTGGCACCTGATTTGTGAAGCTTATTTGAGTCAGTTCATTTCTCCCTGCTGGAAACCTATGATCTTCCATATGAGATCTAGTTAGACATGAACAGGGTGAGGAGAGAGGCAACTGGAGGGAGGGTGAGTTTTGGGATTGGAGCCGGTTCATCTTCACTCTGGGGTCTCAGGAGCATGGAACCTTTGATGAACTTTCTCTCTCCACTCCCCTTCTCTTCCAG
Seq C2 exon
GGCAGCAATGAAGTTCATAAAGAGTCTGGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005947:ENSBTAT00000007806:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]