RnoINT0112603 @ rn6
Intron Retention
Gene
ENSRNOG00000010516 | Plau
Description
plasminogen activator, urokinase [Source:RGD Symbol;Acc:3343]
Coordinates
chr15:3649875-3650422:-
Coord C1 exon
chr15:3650335-3650422
Coord A exon
chr15:3649906-3650334
Coord C2 exon
chr15:3649875-3649905
Length
429 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
ACCCCTACCTTCTCTTTCAGGGT
3' ss Score
12.41
Exon sequences
Seq C1 exon
AACTGCTGTCTAGAGAGAGCCCAGCGTCAGTACCATGAGAGTCTGGCTTGCGAGCCTGTTCCTCTGCGCCTTGGTGGCGCACTCTGAA
Seq A exon
GTGAGTGGTCTCGCTGCTTTGGCAGCTTAGGAAGGGGCTCGCAGGACCCCTTAAGCAGCATCGGGACAAAAGAGGGGATGCACGGGGAGCTTAGGCATCAAGACAGGTTTAGGCTTTCACAGGAAATGGGAAATGTGTCAGCGGAGGGCTTGGGCACCCCAAGAGGTTTGCACTTTCTGGCAAGGGAGGTGGTAGCCACGGGGAGTGCCTTAGCCCAAGGCACTTGGTTTGTGTGAGGTTTGCTTGAGTCAATCCATGTCTGGGTACTGGAAACCCATGGCCTTCATTTGTAGGACTGGCTAGTAATAAACAGAATGGGGAGAGACAGACAGGGGTGGGAGAATGGGGCGTGGGGGTCAGGACCTGTTTATCCTGAACCCAGACTCCCTAGAGCATGTCACCTCTGATGACCCCTACCTTCTCTTTCAG
Seq C2 exon
GGTGGCAGTGAACTTGGAGCTTCTGATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010516:ENSRNOT00000014273:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066076=Prokineticin=PU(18.5=94.4)
A:
NA
C2:
PF066076=Prokineticin=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]