HsaINT1027249 @ hg38
Intron Retention
Gene
ENSG00000122861 | PLAU
Description
plasminogen activator, urokinase [Source:HGNC Symbol;Acc:HGNC:9052]
Coordinates
chr10:73911525-73912068:+
Coord C1 exon
chr10:73911525-73911612
Coord A exon
chr10:73911613-73912040
Coord C2 exon
chr10:73912041-73912068
Length
428 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCCTCCCGAATCTCTTCCAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
AGCCGCCGTCTAGCGCCCCGACCTCGCCACCATGAGAGCCCTGCTGGCGCGCCTGCTTCTCTGCGTCCTGGTCGTGAGCGACTCCAAA
Seq A exon
GTGAGTGCGCTCTTGCTTTGACTGATGCTGCCCAAGGACCTCTGATCAGCACCAGGGGAGAGGAGGGGCTGCTCAGGGAGCTGGGGTCCTCCGGATTCCATCCACAGCAGGGCCAGACTCTCCCCAGGAAATGGGACAGGGTGGCAGCGGAGGCTTGAGAACCACGGGGGTTGGCACTGGCTGGCAAGGGAGGAAGAGGCCGCCGGGACTGCCCCAGCCTGCGGGCATCTGGTAGATGAAGCTTGCTTGGGTCAATCCATTTCTCCTGGCTGGAAACCCATGGTCTTCCATTTGAGAACTAGATACGAACAGGGTGAGGCGAGAGGGAGAGGGAAGAGTGGGTTTTGGGATTGGGGCCAGTTTACCCTCACCCTGGAGTCCCTGGAGCATGGGACCTTTGATGAAGCCTCCTCCCGAATCTCTTCCAG
Seq C2 exon
GGCAGCAATGAACTTCATCAAGTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122861:ENST00000372764:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains