MmuINT0121219 @ mm10
Intron Retention
Gene
ENSMUSG00000021822 | Plau
Description
plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Coordinates
chr14:20837049-20837640:+
Coord C1 exon
chr14:20837049-20837135
Coord A exon
chr14:20837136-20837609
Coord C2 exon
chr14:20837610-20837640
Length
474 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GTCACCTTCATCTCTTGCAGGGT
3' ss Score
10.73
Exon sequences
Seq C1 exon
AACTGCTGTCTAGAGCCCAGCGGCACTACCATGAAAGTCTGGCTGGCGAGCCTGTTCCTCTGCGCCTTGGTGGTGAAAAACTCTGAA
Seq A exon
GTGAGTGGTCTCGCTGCTTTAGCACCATCAGGAAGGGGCTTGCAGGATCCCTTAAGCAGCATCAGGGGAAAAATGGGGGCTGCACGGGGAACTTAGGCATCAAAGGCAGGTCCAGGCTTTCCCAGGAAATAGGACAATGTATCAGCGGAGGGCTTGTGCACCCAAAGAGGTTTGCACTATCTGGCAAGGGAGGAAGAAGCCACGGGGAGTGCCTTAGCCCAAGGGCACCTGGTTTGTGTGAAGTTTGCTTGAGTCAGTCCATGTCTGGGTGCTGGCTAGTAATAAACAGAAAGGGGAGAGACAGACAGGGGTGGGGTGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATTATGAGTGAATGAATATCACTGGAAGGGATTTTGAGGTGGGGACCTGTTTATCCTGAACATGAATTCCCTAGAGCATGTCACCTTCATCTCTTGCAG
Seq C2 exon
GGTGGCAGTGTACTTGGAGCTCCTGATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021822:ENSMUST00000022368:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066076=Prokineticin=PU(19.1=94.7)
A:
NA
C2:
PF066076=Prokineticin=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types