BtaINT0113361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012646 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
Coordinates
chr1:56878513-56888235:+
Coord C1 exon
chr1:56878513-56878973
Coord A exon
chr1:56878974-56887993
Coord C2 exon
chr1:56887994-56888235
Length
9020 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTTTGTTCTGAATGTTTCAGGTT
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCTCCCATGATTCATTCAGCTACTGGGTAGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCCAGCGATCAAACGCCTTGCCAGGATCTCCTTCGTGAAGAAGGTCATGAAGAAATGGTCTGTGACTCAGAACCTGACATTCCGAGAACAGCTGGATGCCGGGATCCGTTACTTTGACCTGCGTGTGTCTTCCAAGCCAGGGGACGCCGACCAGGAAATCTACTTCATTCACGGGCTTTTTGGCATCAAGGTCTGGGATGGACTGATGGAGATCAACTCATTCCTCACACAGCACCCCCAAGAGATTGTCTTCCTGGATTTCAACCACTTCTACGCCATGGATGAGGCCCATCACAAACGCCTGATTCTCCGGATCCAGGAGGCCTTTGGAAGCAAGTTGTGCTCAGCCTGCAGTGTGGAGAGCATGACGCTGCAGAGGCTGTGGGAGAAGAAGTACCAG
Seq A exon
GTAGGAGGGAACAGAGAGAAACTTCCAAGGGCAAGAACGGAACTCTTCCTGCTTTTTCAGGGTCACCAGCCCTAAGACATCTCATTCCAGGGCCCTTGGGGTAGAAGGCGTAGAGTGTTTGTGATAATAAAAATCTGGTTCCTGGGCTCTCAGATGGCTCCAAGGGCTCCCCTGGGTACCACTGAACCGGGATTGCTAAGCTGCTAAGTCATTTCAGTTGTGTCCGACTCTGTGCGACCCCATAGATGGCAGCCCACCAGGCTCCGCCATACCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCCTTTCCTTCTCCAGAACCGGGATTGATACCTGCCAAATATTTACTACATGTTTGGCAACTGGTTGAGCATCTAAGTAGACTTTGAATGACCTGGCCAGAACCAGCCCAAGGCAGAGTTGTGAAATAAGACCAGTTGGCCATTACCATTTTTCTATCTCCCATCCAGTCTGTTTAACCCTCCTTGTTCCCCTTAGGGATAATCTGTTCCATTGAGCCTTCAACTCAATGTCAGATCATCCCTGACATATGTTAATCGATAAGTAGAAGCGTCAGCTGACAAAGGCACAGGAAGTGATTCATCTCAGAGGTGTTAACATTTTTAAAGGCATTTGGGTCAGTGGGGGATACAGAGTTAAGGAAGGAAAAGCCCATGAAGGGATCAAGTCTGGAAGAGCACCCCCAAGTTGAGAAGAGACCCAAACTTAGACCCATGATGCAGAAACTCAGGAAAAGGAGTGTGAGCCTCAGATAAATTCTTCTCTGGTCTCAGAGGATGGTGATGGTGGGAGAGGAGAGCTTTAGGAATGGTCAGGCTCCGATATAGACTCTTTAAAAAGGAAGAAAAAAAAAGACCTTTCTTTCATTCCCAGTTGCTTCCTTACTAATAGATGCATTAACCAAAACATCTTCAAGATGCAGTTATTTTTGAAATGAGAGAAGAGCTTTTAATTAAAAATCAATTTAAGATTACTCATTTGCAAATATATGTTGAACACCAAGTATGTGCCAAGCTCCAAACTAAAGCACTTGGGTTAAATCAGTAAATAAAACAAAGATCCTTGCCCTGGTGGAGATTTCATTCAGGTGGAGGGAGATAGATCATAGGTAATAAATATGATAAATACAGCATATAAAATGTTAGAAAGTCATGGGAGCAATGGAAAAAGAAAGGCAAGCAGCGGAAGGGAAAACCAGGGTTCTGTGGGTTGGAGGATCAGTCACAGTTTTAAATAGTTTGATCAGAGTAGCCCTTGTTGAAAAAATGGCATTTGAGGGAGTTAATCTACTGGGGGAAGAGCTTTCCCAGCAGAGGAACCAACCCGAGCAGAGCCCCAAAGCAGGAAGGTGCCCAGCATTGTTGAGGAAAAGCACGAGCTGTGGGGCTGGAAAGCAGAGCAGCAGAGGAAGGCAGAGAGATGGTAGGGGATCATAGGGGCCTGGTAAGGACTTGGCTTTTACTCTGAGTGGGGAAGGTTCTGGGAGGGTTCCAAGCCCAGGGTGCTATGGCCTGGCTTAGGTTTTGATGGCATCCCTCTGGTTACTGAGAAGAGACTTGGAGTAGAGACAGAAGGAGAGTATGGAAACCAGTGAGGAGAATCTCAGTGGAAAGAGAATCTCAGTTCAAAATCTCAGATTTTGAACCCAGGAGAAGTTAGAGCTAATAGGGTTTCCTCATTGTTGGGACCATGAGGATTCAAGGATGACTCCAAGACTTGGCCTAAGGAGCAAGAAACACTGGATTGCACTGTGCACCCCTAAATGGCTCTACAAATACTAAAGAGTTAACTCTCAGATCAGATCAGATCAGATCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAACCACAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAAACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGCCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCCTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACACTTCAAAAGCATCAATTCTTCAGCACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTCACGAGATGGACCTTTGTCGGCAAAGTAATGTCTCTGCTTTTGAATATGCTGTCTAGGTTGGTCATAATTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTAATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCTAACTTTTTCATTCTCCACTTTCACCTTCATCAAGTGGCTTTTGAGTTCCTTTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAGTCTTAATTCCAGCTTGTGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATAAGTTAAATAAACAGGGTGACAATATACAGCCTTGATGAACTCCTTTTCCTGTTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTCCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAGTTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATATGGAAGTTCATGGTTCACGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTGGCAGTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTAAGTTTTCCAAATATGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCATAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCTAGGATGTCTGGCATGTCCTAGTTAACGCTCAGTGTCTGTTAAAGTTATCTAAGCTATTTTTCTTCACTAAAACTTTCATAAGTGATATTTTGCCAAACATTTACTACACCTCTCCCCTAAACATAAGTTTATATCTGTTTGGACTCACAAGCCTAATTTGGAGAAACTTTTCCCCAGTGGAATCTCTCTCTTACAACATTAAATAATACTAGTAACAAGAACAATACTAACATTCATGGGACTTTTACAGTGTGCTAAGTACAGGGATTAACTCATTAAATTCTCTCAACAGCACTAGGACATAGGTTGTCATTATTATCCTCACTTTACAGATTTGAAAACTGAGGCTTTCCCAGTAGAACATTCTTGGTGATTGGCAAGGCTGTCTCAGTCACAGACTGTCAGCTCCCCAGAGTTCCCACAGATCTCAATGCTTTCCCAGGGCTGTTCACACATTTGGTGATTTTCACAACCAGAGTCATAGATTATGCTAACAAAAACACTTTGGCAAAGTTTATCATAGGTTTTCAGAGGGTTTGCTGAATGGGAGACAGGGAAGATCTGTGAATGGGCCTTTGAATATGAGGGTTTGGGTAAGGTTAAATTTTGAGCTAAGTTGGTAAACAGGTTATAATTTTATAATTTTGTACACTGGCTGCCATATTGCATACTAGATCATTTAGAAATTTGCAGAGAAACAGGTAATTTCAGGAGTAACAAATCATTCTGGCAGTGAATTTCTAGCAGAGAGTAAAGCTCTGATATAGTTTTAAGAGTGGGCTAATCAATATCATGGTAATCCAAGCCTATGCTCCAACCAGTAACACTGAAGAAGCTGAAGTTGAACGGTTCTGTGAAGACCTACAAGACCTTTTAGAACTAACACCCCAAAAAGATGTCTTTTTCATTATAGGGGACTGGAATGCAAAAGTAGGAAGTCAAGAGACACCTGGAGTAACAGGCAAATTTGGCCTTGGAGTACGGAATGAATCAGGGCAAAGGTAATAGAGTTTTGCCAAGAGAACGCACTGGTCATAGCAAACACCCTCTTCCAACAATACATGAGAAGAATCTACACGTGGACATCACCAGATGGTCAACACTGAAATCAGATTGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTATACAGTCAGCAAAAATAAGACCGGGAGCTGACTATGGCTCAGATCATGAGCTCCTTATTGCCAAATTCAGACATAAATTGAAGAAAGTAGGGAAAACCACTACACCATTCAAGTATGACCTAAATCAAATCCCTTATGATTATACAGTGGAAGTGAGAAATAGATTTAAGGGACTAGATCTGATAGACAGAGTGCCTGATGAACTATGGACAGAGGTTCGTGACATTGTACAGGAGACAGGGATCAAGACCATCCCCATGGAAAAGAAATGCAAAAAAGCAAAATGGCTGTCTGGGGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAAGGGAAAAGCAAAGGAGAAAAGGAAAGATATAAGCACCTGAATGCAGAGTTCCAAAGAATAGCAAGGAGAGATAAGAAAGCCTTCCTTAGTGATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGAGATCTCTTCAAGAAAATTAGAGATACCAAGGGAAGATTTCATGCAAAGATGGGCTCGATAAAGGACAGAAATGGTATGGACCTAACAGAAGAAGAAGATATTAAGAAAAGATGGCAAGAATACACAGAAGGACTGTTCAAAAAAGAGCTTCATGACCCAGATAATCACGATGGTTTGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAGCATCACTAGGAGCAAAGCGAGTGGAGGTGATGGAATTCCAGTTGAGCTATTCCAAATCCTGAAAGATGATGCTGTGAAAGTGCTACATTCAATATGCCAGCAAATTAGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCACACAATTGCACTCATCTCACACGCCAGCAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAATAGTACGTGAACCACGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAACTGCCAACATCTGCTGGATCATAGAAAAAGCAAGAGAGTTCCAGGAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTGTATGCAGATCCGGAAGCAACATTTAGAACTGGACATGGAACAACAGACTGGTTCCAAACAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTCAATGCAGAGTACATCATGAGAAATGCTGAGCTGGAAGAAGCACAAGCTGGATTCAAGATTGCTGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATAAAAGTGAAAGATGAGAGTGAAAATGTTGGCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAATGAAAGTTATGACCATCCTAGATAGCATATTCAAAAGCAGAGACCTTACTTTGCCAACAAAGGTCCATCTAGTCAAGGCTGTGGTTTTTCCAGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGTGCCAAAAAATTGATGCTTTTGAACTGTGGTGTTGGAAAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGCTAAAGCTGAAACTCCAATACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGCGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGCTAGATGGCATCACCGACTCGATGGACATGAGTTTGAGTAGACTCCGGGAGTTCGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCTTGGGGTCACAAAGAGTCGGACATGACTGAGCGACTGAACTGAACTGAATCTATATCATTCAACAACCAACACCCCTAAAATTATGATGGAAAGAGACTGTGATGACATGTCAGAAAAAGGTCTCATGTCATCAATTTGAATTTCAGGGCTTCCTTTGTTCCACTTTCTTTCCCAAAGGTTTCCCTGCCATGCCTCTTAAAAGCTGAACAAAGAGATCTCCAGCAGAGCCTCAGTTACCTCCCCACTGTTGGAGCACGCCACGCTGGCGGTTAAACTTTATTCATTATGTAGTGAGCTGCCTTGCATGTAACCCCCAGAGTATTTTATTACCATAATTTAATGGCAAGAAGTGTACAACCATTCAGTCACATTTCATTTACTCCATATGCAATTACATCCCAGCTCACAGGTTTGTGCCGGTACATTAGTGGCTATGGGTTTTGAAGGTACAGTGAATGAGAAGATTTCATCTACAATTTGGCAGTATTAGAATCTTAATGAGAAGGTAAGAAGAATATGTGACACTAGTAAAATATAAGACAACTGATATACAATTACGAGACGAAACTGCCTCAAATGTACTGTATGAAGAAACGCGTTTGTAAGCCATCAGTTGAAAAATAGTATATAGTCTAAACCTACATCCTGGGGCCCTTGGAAAAGAATGATCAAAATAAGAAGAGGTCAATTAAAGAATAATTCTATACAGGAAATGAGATTTTAAATCTGAGTCTCAGGAGAAAAGTGGCACATAAATTGCTGAGCTGGAGGGAAGAATATCTCAGATGGGAAATACAGCAGAGTGAGGTTGGGAGTCTGATGCCAAACACAGGCCCCGGGCAAGCTGCTGCCCCTAAAATTCTGTAAAAGGAGTCCTGGTGTGCTAGGCCAACCCCCTACTGTAAACAGAAATTACCCCTCTAACCTTCAGGATCAGATTACTCAAGAGGCTCCTGAGGAAAGGCATAAAGCCCCTTTTGTAGAATGTGTCTTTTTTGCACATTCTCCAAGGCAGAGTGAAGAACGGCACTGTCCTTTCAACCCCTGACCCTCTGCCCAGGGGCCAGGAGCACAGGAAGTGGTCTGACGGGCCCTGTTGAAGGATCATGCAGCCTTCCGCCTCTCTTCTCACTGTCCATTTCACAGCCAGCTCTTCACCCTTATGGATGTTGGAGACCCCGGCCTTCCAAACAAGCCATTTACAATGCCAGCAGGAAATCCTCCCCAATCTCCCAGGCAATCTTCTTACGATGAGCCTGTGATTAACCTCATTAAGACATGTGTTTACCACAGACATCATTAGTAGTCAGTCAGACATTACTCAGAGCCATTAAACACAACGAGAACAACCATTAGTCTGTTCAGTGCACGGAGCTTGGCGCTCCCTTGCTCCAGGCCTTCCAGAGCAGTTAGGCTCCTTAGTCACCAGCTGAATGTGCCCCGGAAACAAGACCCACATTCAGAGTCTTGCCCTTGGGTGCCTGGAGGATTATGCTCTCAGGCCAGCTATCCAAGGATTGCAGTTCAGGGAATGTAAATACACAGGCTGGACATTCCCTTAGGAAAGAATCCCTGCCACCCAGGAGGAGAGAAAATACACTACTGACCTCGGTTCAATTCCTGGGTCGGCAAGATCTGCTGGAGAAGGGATGGGCTACCCACTCCAGGATTCTTGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCGATTCCTGGTTTGGGAAGTTCCCCTAAAGAAGGGGAAGGCTACCCACTCCAATATTCTGATCTAGAGAATTCCATGGACTATGCAGTCCATGGGGTCACAAAGAGTCGGACACGACTGAGCGACTTTCATTCACTCAGTCTGGAAACGTAAGCAGCAGAGCTCTGGACTGGAACAATCCCTGTCTCTCAGCTGCCTTCAGAAGCTAATTTATGCTGCGATGTAGCTTGCTAATTATTTTAGCAATACCGCTAGTATCACCACCATCCTGAGAGGTCCCAATGGAGACTCATCCCCTAATCGAAGTCTTCCCTGTCTTGTGCAGCTCCTGCTCTCCCTTCCTCACCTGGCAGGTTTCCTTCAGAATCAGCACACACAACTGAAAACCTGAGACCTCTCAGATTAGTTCAGTGTGTCTATCTCAACCCAAGGGCTCAGGGTCAATTCCGTGAACATAGGAGTCATAATTTACAGGACCAACCACAGAGGTTCTCCACCTGGGGTCCAGCGATTCCCAAGGGCAGGGGGTCAGGATAGAATTGAAGAAGTCCGTGAATTTGGATGGTAAAAGCACTGCCTATGTACTTTCAGCCTCTAACTGAATATCAGCATAACTGCTGATAGGAGTGTGGCTCATGAACTGCCCTCCTTTGTTCTGAATGTTTCAG
Seq C2 exon
GTTCTTATCTTCTATCACTGTCCCTTCTACAAGCAATACGCCTTCCTGTGGCCTGGAAAGAAGATCCCAGCGCCCTGGGCCAATACCACGAGTGTGCGCAAACTCATCCTGTTCTTGGAGACCACGCTGAGTGAGCGCTCGCCCCATGGCTCCTTCCACGTGTCTCAAGCTATCCTCACACCCAGAGTGAAGACCATTGCCCGGGGCCTGGTTGGCGGCCTCAAGAACACACTGGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012646:ENSBTAT00000016779:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034908=Varsurf_PPLC=PD(44.4=13.0),PF0038814=PI-PLC-X=FE(90.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development