MmuINT0121646 @ mm9
Intron Retention
Gene
ENSMUSG00000087141 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:MGI Symbol;Acc:MGI:3647874]
Coordinates
chr16:45972222-45980809:-
Coord C1 exon
chr16:45980349-45980809
Coord A exon
chr16:45972464-45980348
Coord C2 exon
chr16:45972222-45972463
Length
7885 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTGCTCTGAACATTTTAGGTT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCTCCCATGATTCATTCAGCTACTGGGTAGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCATACGCCTTGCCCGGATCTCCTTGGTGAAAAAGTTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCAGGGAGCAGCTGGAGGCTGGGATCCGCTACTTTGACCTACGGGTGTCTTCCAAGCCTGGAGACACTGACCAGGAGATCTACTTCATCCACGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCCTTCCTCACTCAGCACCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGAGCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGCGTGGAAAGCATGACACTGCGGAGTCTGTGGGAGAAAAAGTACCAG
Seq A exon
GTAAGAGGAAGGAGGGATGCACTTCCGAGAGCAAGAACTCAACTCTTGGCTTTCCTAGGTTGACAGCTGTGACATAACAACCCAAGGCATGGGAGCTGAACAAGTAGATTGCTTGAAGTACTGAGCATGTGCAGTAGAGTACCTAGACTCTGAGATTTAACCGTCCTGGTGGGACTGGGCTTAATGCTTGATGTCTTAGCTATTTTTCTGTTGCTGTGCTAAAACATCATGACTAAGGCAACTGATGAAAGAAAGCATTGGATTTGGCTTATGATTTCAAAGGGTTAGAGTCAGTGATGGCAGAGCAAAGGAATAGAAGAGCTAAGGGCTCCCATCTCGATGAGCATTCATCAGAGACAGAGACAGAGACAGAGACAGCACTCCGAATGTTACAAGTCTTTTGAAACCTTAATCCATCAAACACTTCTACCATCTTGGACCTAAAACTCAAATATATAAGCCTCCATGGGCTGCATTCAACTTCCCTGGACTTCATAGATTGTAGACATATCATAATGCAAAGTCCATTTGACCCAAATTCAAAAGGTCCTATAGTCTTTCACAGTCTCAAACCTGTTTAAAAGTCTGAAGTCTCATCTGAGACTCAAGGCAGTCTCTTAGCTGTAACCCATATAAAAACAAAAGCCCAAAGCAAATGACATACGTTCAACATGCAATGGTACAGAATATACATTACCATTTTTAAAGGGAAGAAAGAGGACATGGTGAAGAAATGCTAGACCAAAGCCAGACTGAAACCCAGAAGAGCAAACTCCAAATCCTTTTCCTTCATGATTAGTGTCAAAGGACTTCCATGGTTTTGTCCTGTCTACAAAATACTTCTTTCTTGAGCTTGTTCCACTGCTTATATGTAGCTCGCTTTGTCAGAAATCTCATGACTCTGCCACCTCTAACTTCTTCAACACACTCTTGGGTTAACTTTCACAGCTTCATGCAGTGGTCTCTTGGAGCCTTGAGCCTGGCTTCAGTTTCTCCCCTTAACTATGGAGAAAGATTCCATAACCCTCCATTCCCATAGCCTTCGTGGCTTAAAGTCCAAACAACATGAATGAGACTGCCAAGTGTGACTACCAGCTTGGCACCCAGAAATCACACTTGTCGAAGAAGCTTTGATTTGTTCTTGCTTGTTTCAAGCAGGAGATTCCATTTTAGAACTTGAAAGCTTATCTGGGTGGAGTCTTGCCCTGAGGCCACTCCTCCCTTTATTCTATTTAAGACCAAGTTTCTCTTTAATCTTCTCAAGTCTTTCAGAACAAATCTTGGCACCACCATTACATTTGGTGCCCCCTTTCCTCTTTAAAATGTACAGTTTGTATTTCTTTTTGTCCTGCTTGCTCATTGCAAATGTAGACCTGTGTGATTACCACAGGATAGGGACAATATTAAAAGTTTTCTTGAAATCTCCTCGGCCAAAGAAATTAGTCTAAAACTCTGTGATTTAGCCTTAGGAAAATTCATAGGACAAGGACAAAAAGCAGCTGCATTCCTTGCCAAAATATGGTCTCTAGCCCCATTGTTAATATTATTCCCCTCTGACCTGGACTGGTCCATGAACTGGACCTTTATAGTCTATCTTGATCTCAGCATCTACTAGGAATGCCCACTAAGCCCTCTTCCTAGTGCTCTACATTTTTCTCAGCCTGAAATCCCAAATTCTTCCCCATTCCTCCAAATCCCAGCACAGTCAGGCTCGCCACAGTAATTCCTCACTTCCGGTGCCAGTGTCTGTCTTTGCTATATTTCTATTGCTATGATAAAAGGTCAGGACCAAAGCAACTTATAAAAAAAAAGTGTTTGATTTGGCTTATGGTTTCAGAGAGTCCATGATGGTGGAACAAAGCCACAGAGGCAAGAGTTAGCAGAGGGCTCACAAAGCAGATCCTCAACAGTGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACACTAGGAATTGCACATGCTTTTTGAAACCTCAAATCCCACCCTCAGTAACGAACCTTCTCCACCAAGTCCACACTTTCTAATCCTTTCCAAATCTTTCCAACCAAGCGGGGACCAAATATTCAAATAGATGAGCTAAGGGGGACATTCTCATTCAGACTGCCACACTACCAAATACTTAAAGTTTGCCTGCAGTCTATCTGACATCTAAATTAACTTTTAATGGGGTGGCCGATGTCTGCGCAAGGCAAAGTTGTGAAATAAGCCAATTGTTCAGTAGATCATTATTCTGTCTTATCTAAGGTCTGCTTAATGCCCTCTATCCACGCTCTTCTCCTAGTAAGGATAAACCTCCAAACCTGAGGCGCATGCTCAGCAAAAACACAGGCCTTAAATGCCAAGGCGTGCTGGTAGCAAATGAGAGCTTTGAGAAAGGACAGCCTCTGACTTCAACTTAATCCAAGAAAAACAAAAAGGGTACATTTATTCAGAGTTGTTCCTACCCCATTAAGTACATTGAGAAAAATGTCTTTAAAAAATGTCCTTACACATGCAAGGCAAACAGCTCTCCCACTGTTCCACATCCCTGGCCCTAAGAAAAACTTACTAAAGTAGTATTTTCAGGGACCAGAGCGGTGTCTAAGCAGTTAAAAGCACTTGCTTTACAATGATAATGATAGATGTTCTGGTCCCAGCATCAACAAAACAAGTGAAATGTCCCCTACAAGTGACCATAACTTCAGGTCTGTGTGGGGGTGTAGACAGGTGGGTCACTGGACACTTCCAGATTAGCGAAGAAATTGTGAGCCTCGAGTTCAGAGAGAGACTGCCTCAAATGAATAGATGAAGAGAAATAGTGGACGCTGGTGTTCTCATCTGGCCTCAGTGTGCATTCAAGGCTCACATGTACTTACACTCATAGGTGTGCATGCATATGCACACACACACACACACACACACACACACACATACGTACTTACACTCATAGGTGTGCATGCATATGCACACACACACACACACACACACACACAAACAAATAAATAAATAATAAAAAATTAAAAACAAACATTTAACTCTAGGAGGAACTTCATGTTTAAAAGGAGCTCAGTTATTTATCTTAAAATATTTGTTGAGTACCAAGTATAAGTGATATTTTCTCAAGTATGTATCACATCTCTTCTCCCACACCTAAGTATAATACTGGTCAGACTCACAGGTCTAATTTAGTTTAATCTACTTAGTTATTTGTTGTGGGGGTCATGCTTTATTATAGCCCAGGCTTGCCTGGAACTCTTTAAATGCCAACTCAGTTTTACTAAGCCACCAGAATCAGATGAACTGTTTGATCTTCTCAACAACACTAGGAGATAGGCATTTGATATTGCCCCCTCCCCCCACTTTGCAGATGGGAAAATTGAGGAATGGAGATACTGCAGCAGCTTGCCAAGAAAGCCCTGTGAGTGAGAGTGTGCGTCAGGGTTCCCTCATTGGCTAGTTTCTCTCTAGTATTCCCATAGGCCTTGATGACTGTCACAACTGCCTTCCTGTGTTCTGAAATAAAAACACTTTCATTTCACTAAGAATATTCAAAGACTGATCATAAGTGTGACACTGTTCCAGCATGGGGCCATTGACTCATGGCTCTCCTTGAGTGCTCCTGTGTCAGCTGTTAAAGAGACATTAGTTGGGGATACTTTATTTTCAACAGGCCTCATTGTTCCCATTGAGAAAAGGGGACGGCATTTGAATGAGGGGGTAAGGTAAGGTTAAATATGAGGTCAGTAACATTGTGTAATTTGGTACACAGGTAAAATTCTGCATGGTTGACAGATTGCACAAAAAAAACAAAAAAAAAACAGGCAGATCCCTGGAAGTCATTGGCCACCCAGTCTGGCTAAATAGAACTTTAGATTCACCAAGAGACTGTATCTCAAAAAGTAATGGTTCTGGGAACAGAAGAGGATCCAGAAAGTTAAGGAACTTGCTGCCAACCAAGTGACAACCACAACAACATGAATTCGAGCCTCAGGACCCACTGGGAGGAAATAGAGAATTGAACCCAGGTGCTGTTCTCTGACCTCTACTTAAAAGGAGGTGGGAAGCTATGAAGGGAAGATACCCAAGGTCAACCTCGAGCTAGCCTCCACACATGTGCACAGGGGCGCACCTGCACCTACATGCACATATGAACACACCCTCACTAACAAGTACACATACACACAACACACACACTCATATACACACACATGCTTACACACCCACATGCACAGGCTAATTTAGCAGCAGCGTTATCCACTATAGATAGTCCTATGGTTATGGAGGAAAGAGACTGGAATGATATATTGAAAAGAGAAAGTATCCCCAACTTAATGTCACTTTAAGAGCTGGAACAGGAGCACTCAAGGAGAGCCACCAGTCATTGCCCCATGCTGGGGCAGTGTCACACTTGTGATCAGGCTTTGAATATTCATTATGTGATGAGTTGCCGTGAAATCTCCCCAACCCCTCGTACCCTCTCCCCCAGTGTTTTATTACTGGAATTTAGTATCAGGAAGTACTCTACCACCAGTCACATTTCATTTACTCACCATGTAATTATATCACAGCTCACAGATTATAGATGCATACCCTAGAGACAAGGCTTAAAGGGTACAATAAATTGGAGGATTTAGCCTACAGTTTGGAAATATTTGAGATCTAAATGAGAAAGTAGGAAATCTATAACCCACCAGGCCATGGTGGCACATAACTCTCCCCCCTTTTATTTATTTATTTATTTATTCCCTATACATACATATCACACACCTCCTCACCTCCCAGTCCCACCCTCACACAGCCCCTCCCCCATCCCTCACTGCCCTTCATCTCTGAGAAGGGTGAGGTCCCCTTTGGGTACCAACACAAACTGAGATCTCAAGTCATTACAGGACTAGGTCAATTTTCGCCCACTGAAGTCAACTAAGACAGCCCAGTTAGAACAACAGGAACCACAGATACACATCTTTAGTCCCAGGACTCAGGAGAAAGAAGTAGGCAAGTCTCTTAAGTTTAAGGTCATCTTGGTTCAACCCCTCGAACCCATAGTAGAAGTTGAGAACCAACTCCTGAAAGTTATATTCTTATGTCCACGCCCCTGCAAACAACAAGAAGAAGAATTAATAGAAATAATATATCAACATAATGTAATAATCAACAACACGATTAGTATGCAATCGTAAGATAAGATCAAGCCTGGTGTCCTACATGGTATGAAGAAAGGAGTTTTATAATCCATTGAGAAGTGGAGCACACCATGAGCTGGCACCCCAGAGACCCCAGTAAAGGAACCATCACAGTATGAAGAGATCGCCTGAGGGACTGTTCTTAAAAGAAATGGGATTTTTTTCATCTTAGTGTCAAGAGGAAAACTGAACATGAACTGCTGAACTGGACTGGAGATATTTCAGGGCAAAGTGGCACAAGGGGATGGGGAAGGAGATGCTCTACACAGGCTGGGTGAGAGTCTCTACACCTGTGTTTTATAAGCAGAGATTCCCCAATAACCCTCAGATCAGACTCTCCAAGAAGACCAAGGGGGAAAGAACAGAAAGCGCCTCTCGTGTGATATGTACTCATTACACATTTTCTGAGGCAGAATAAAGTTGAGTACTGCCCTCTAGTGTGTGGACGCACAGCCTGGAGGCAGGTGTCTTGGGTACCACCTGCTAAGCCTGTCACAGGGTTGCTGGGCTTCCTGCCCACCCCACCCCCAGCTCCCCAACCTTGCTGCCCAGGGCAGCTCTCTTTCGGGCTTCACCCTTCCAACCTAACCAGTTTCAGTGCCAGCAGGAAGTCTTTGGGTCTCCCCAGCAATCTGCTTACAGTGAGCCTGTGATTAACCTCATTAACGCCTGTGTTTACCACCGTCACCATCAGAGCTCAGCATTACTCAGAACCCCTAAGAACCAGGAGGGTAGACATTACTCCATTGGCAGCCCCTGCCTCTGGGCATTCACCAGGTCTGGCGCCTTCATCATCACCTGAACACACTGGAAATGGAATGAACATATAGAATCCCACCCCCATCCTGAGTGCCTGAAAGGTTACTCAGAAGATTACAGTCCACATGGTAAATGTGAGCCAGGCATTCCTCTCGGAAGAGTTCACCCGTGCCCCTAAGGGGAAAACTACAGCTCTCCTAGAAAACCACACAACAGAGCTCAGAACTGGGGCAACCAGAATAGCAATCCTCTGGCCCCCAGCTGCCTCCCAGAAACTAATTAATGCTGTGGCTATAGCTTGCTAATTATTTTCAGAATTACTGGCCCCACTGGAGGCTCGTGGCCTTTACCAGGTCTTCCCTGGTACTGGTGGCACATTGCTCCCCTCTCCTGGGATGGGTAACTCTTTCATCAGAGTCAGTGCATACAATTGAAAAATCTATTCACTCTCAAATAAGTTCTCACTGTTTATCTAAACTCCGAGAGCTATGGCTACTCCAAGTGTCAATGTCATGAGCACTGGAAACATGATTTCTGAACCAGACTGGATTCAGCCTGATACTCTGAGACTTCCCAGGGACTGTGTGAGGACAGAATGTAATGAGGCTGTGTCTGGTTGGTTAAAAAAAAATAACCACAATTAAAAACTACATCTCTTCAACTCACCTTGAATAAGCACCAGTCATATACACTGCCAGTAGGATCTTGTTTCTGCAGGGTTGACCCTGCCTGTCAAGTTTCCTCAAGGATGTAGCCTGGTCACGTTCTCTGCAGATTGCCTTAAAATATGTTCATGCTTCTCACTAACTCCTAGTTAATGGAGCTTATTAGACCCTATCAAAATCATTTAATGTATTTATCATAAGGCTTCTACATTAATTTCTTACAAATATGTTCGTTATCCAAATAGGCATAGTCCTTTATTTCTTATCAGTTTCCTTTATAATCTTGTCCATTTTGTGCATTTATTAAAGAAATATCTGTGAGAAGTTGGTCAATGGCCTTATCATGTGCATGACCAACAAGGTAATACCCTCTGAGTGAGACAGCAAGTTCTCAGTAACTCTTTGTTTCTTTACTTTTTAAAAATAATATATAGGGCCAAGGAGGTGGCTCAGTGGGTAAGGCACACTACCATAACCTAGGTCCCATTTGCTTGAAGGTGAGAACTAACTCCCCAAAAGCTGTGTTCTGACTACTACGCATGTTCTGCAACAGTTTGTGTACCACTGCATCTCTCTGCCATTGTACTAAATAAATAAATAAATAAATAAATAAATACATGTGATAAAAAAAAACATTATCTAGGCAAAACACAGTTCTCACCTCAAAGAGAATAAGAAATAGTTTGTTATTGAGCCAAATAGGAATGGGATGGGAACAGAGACTCAGGTTGCCTGGAACAACTTATGTATTTGATTAGCCAAGAAACTAAAGAAAGCCCTAAGACAAGACATTTCTTAACATTAGTAGAGACCACAAGTAGGCAGGGTATAGCAAGAGAAGTCATTACAGGTTTAGGATGCAGCCTATGGACATTTCTGTTCTTGGAAGCTGGTGATCTGCTCTGAATACATGACAAAGGCTTTAACCTGATAGTTAAAAGGATGTCAGGTCAGGCACAGGTGTGAACAATGAATGGCTATTGAAAGGAGCAAGGCTAGCCTAAGATAGTTTGACTGTAGACTCCAACCTTCTTACGTTCCACAGTCATGAAGTTCTAATCTGTCGTTTAGCCATGTAAAACCTTGCACAGAGATAAGGCTCCCCGACACACACACACACACACACACACACACACACCTCCCAGTTTTTGTGAACAATTCTGCTACTTCTGAGCATGTTTGTCCACCTCTCTCTCTCACTGTTCAACTACTCAGCTTTTAAATGCTTCTGTCCTTTTTCTGCTCTGAACATTTTAG
Seq C2 exon
GTTCTCATTTTCTACCACTGTCCCTTCTACAAGCAATACCCATTCCTGTGGCCAGGGAAGAAGATTCCGGCACCCTGGGCAAACACCACGAGTGTGCAGAAACTGATCCTCTTCTTGGAGACCACCCTGAGTGAGCGAGCTCCACGTGGGGCCTTCCATGTCTCCCAGGCCATCCTCACGCCAAGAGTGAAGACTATTGCTCGAGGCCTGGTGGGGGGCCTCAAGAACACACTAGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087141-Plcxd2:NM_001134480:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034908=Varsurf_PPLC=PD(43.5=13.0),PF0038814=PI-PLC-X=FE(90.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: