HsaINT0126953 @ hg19
Intron Retention
Gene
ENSG00000240891 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:26462]
Coordinates
chr3:111426773-111432975:+
Coord C1 exon
chr3:111426773-111427233
Coord A exon
chr3:111427234-111432733
Coord C2 exon
chr3:111432734-111432975
Length
5500 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGTGTTTTGAATATTTCAGGTT
3' ss Score
9.45
Exon sequences
Seq C1 exon
GCTCACATGATTCATTCAGCTACTGGGTGGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTATCAAACGCCTCGCCAGGATCTCCTTGGTGAAGAAGCTAATGAAGAAGTGGTCTGTGACTCAGAACCTGACATTTCGAGAACAGCTGGAAGCTGGGATCCGCTACTTTGACCTGCGTGTGTCTTCCAAACCAGGGGATGCCGACCAGGAGATCTACTTCATCCATGGGCTTTTTGGCATCAAGGTCTGGGATGGGCTGATGGAAATTGACTCGTTTCTTACACAGCACCCCCAGGAGATTATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGACCCATCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGAAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGTTTGACGCTGCGAACTCTGTGGGAGAAGAACTGCCAG
Seq A exon
GTAGGAGGGAAGGAGAGATAAGCTTCCAAGAGCAAGAATTTAACTCTTCCTGCTTTTCCTGTATTGCCGTCTGTAAAATCACTCAATCCAGGGCTCTTAGGCTAAAGAGTGGATTGTTTGGAATATTAAACATATGCAAACTAGTTCCTGGGCTCTAGAATAGGTTCAAGGGCCAGGGCTAACACCTGCCAAATACTTAAAGCTTGTCCAGCAAACTGTTTGACATCTAATTGACTTTTAGTGGCCTGGCCAGAACCAACCAAGGCAAAGTTGTAAAATTGGGCCAATAGGTCATTACTATTCTCTGTTTCCCGAGGTCCATTTTTACCCTTCTGGTTCCCCTCAGGGATAGTCTGTTCCATCTTGCCTTCAACTCAATGTCAGATAATCCTGGCCAAGGTATCGACTGATTAGGAAAAGTATTAGCTGACTGAAACATAGTGATTCATCTCAGGAGTGTTAATATTATAAAAGTATTTGGGTCTTAGAGGGAGAGAGAGTTAAGGAAGGAAGAGCCTGTTGAAGGGGCTGCAGCCTGTAAGAGCATTCCATAGTCTGCTTAAGTTGAGAAGAGCCTGCCAGCCTAGGACCATGAGGGACACGCTCAGGAAGAGGAATGTGGGCCTCAGATATATTCCACTCTGATCCTAAAGGATGACAGTAGGAGAAAAGAGCTTCAGGAAAGTGTTTAATTTACACTCTCTGGAAAAAAAAAAAAAAAAGACATACCTTTCATTCAAAGTTACTCACTTGCTCAGCAGATGCATTAACCAAAACAACTTTACGAGGCAGATATTTTTTAACTCAAGGAGGAGCTTTTGATTAAAAATAGTTTAAAGGTTATTCACTTGAAAATATTTATTAAACACCAGGTACATGCCAAGTAACCTCTAAGGACTAGGGATAAATTAGTAAATAAAATAGACAAAGATACCTTGCCCTAATGGAGCTGTCATTCTGGTGGAGGGAGATAGATCATAGATAATAGAGATAATAAACATACATATATGTGTGTGTATGTGTCTGTGTGTCACATATATACATATATGTATATTCTCTCTCCATATATGTGTGTGTATATACACACACACACACACGCACACACACACATAAAGTGTTAGAAAGTGATAAGAGCTATGGAAAACGAAAAGGTCAAGCATGGTGAGAGGGAACCAGGATTCTGTGGGTTGGAGGATTGGTTGAAATGTTTAAAAGTTGATCAGGAGAGGCTTCATTGAAAAGATGACATTTGAAGGGGTTAATCACATGCTTATTTGGGGGCAGAAGAAGCAGGCAGTGCAGAGACCCAAAAGCAGGAGTGTCCCTGCCATCTTTGAGGAAAAGGAACATGCAGTATGGCTGTAGAGCAGGTGAAGACAGAGTAGTGAGAGGAGGTCAGAGAGGCGACTGGTGATCATGTGAGCCTAGAAGGCCCTGTAAAGACGCTAGCCTTCACTCACTCTAAGCGAGGAGAGTTCTGGCACAGGATGTTGTGGCCTGACTTAGGTCTTAATAAGATCTCTCCGGTTGCAATACTAGGAAGAGACCAGGGCAGGGGGATTGGGCAGAAGTAAGGAACCCAGTGAGACTGTTAGTGGCAAGTGGTCAGATTTTGCATCTGTCAGAAGGTAGAGCCGACAGGGTTTCCTAATGGATATGATTTGGGGTATGAAAGAACATGAGGATTCAAGGATGAGTCCCAGGCTTGGCCGGAATAACTGGAAATACCAAGTTGTTTTTGCGCACCCTGAGAAGTTCTAAATGTCTTCGACACCACGGAGGCTTCATGAGTTAACTCTTAGTATCTGCTAAAGTCTATCTAAACAAGTTTCTTCACTAAGACTTTTGTAAGTGATATTTTGCTAAATATTTATCACACCTCTATACCATAAAAGTAAGTTTATATCTGTTCATGTCTAACTTGGAGAGACTTTTTCCCAGTGGCATTTCTCTTTTACAATATGAGATAATGGTAACAACAACTAATGTTTATTGAACCTTTACAATGAGCTACGTACATGGATTAACTCATTTGATCCTCTCAGTGACACCATGAGATGGGTACTTTGTTATTGTCACCATTTTACAGATGAGGAAACTGAGGTATGGAGACACTAAGCAACTCACCCGAGAGAAACCTGGGCAAATTTTAAAATCCTAGTTAGTGAGAACCAGGATTCAGTCGCAGGCTTTCTGGCTTTCCAGAGTTCTTACAGCTTCTCATGCTCTCTGAGGGGTATTTAGGCACATTGGTGTTTTTCACAACTGGTGTTGTATATTAGGCTAATGAAATACTTTGCTTTTATTAATGAGCCCCTATTATCAGAAGATCTCAGAGAATTAGCAGAATGGGAGAAAGGGATGGAGAGCTTTGGAATTTGGGGATTCGGTTAAATTTGAGTACAGATATAATTTTATACACAGCCAGGATTGAGATGGGTTGACATATTGCATACTAAACTGCTTACAAATCTGCAGGAGTAAGGGGTATCTTCAGGAATAAAGAATAGTGTAGGCAGTGAATTTCTAACAGTAGAGTGATGATCTATCATAGTTTTTTAAGCATGGGCTAATTTAACTGTATTATCCAACTACAAATACTTCTAAAGTTATGAAGGAAAGAGACTGTGATGATATCTCAGAAAAAGGGAGAGCATCATCAGTTTAAATCCTAAGATCCCCCTGTGCTCCCTTCTTTCCCATGTTTTTCCTGCCACATTTCTTCTTGAAAGCTAAACAGGCTGGGTGCGGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGATCATCTGAGATCAGGAGTTCAAAAGCAGCCTGGCCAACGTGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACACGCCTGTAATCCCAGCTACTCGGCAGGCAGAGACAAGAGAATCGCTTGAACCCAGGAGGCAGAGGTTTCAGGGAGCTGAGATCGTGCCATTGCCCTCCAGCCTGGCTGACCAGAGTGAAACTCCGTCTCAAAAAAATAAATAAATAAAATAAAATAAAGCTAAACAAAGAGATTTCAAACAGAGGCACCAGTCATCCCTGCTACTGCCAGGGCAGAGTTAAACTTTAAATATTTTTCATGTAATGAGCTGCCTCACATGTAAGCCCCTGCGTATTTTATTACTACAATTTAGTTGAAAGAAGTATGCTACCATTCAGTCAAATTTCATTTACTTAACATGCAATTACATCATAGCCATAGGTATATATTTATTTGTACATTAGTGGCTATGGGTTTTGAGGGTACAATGAGTTAGAGATTTAATCTACATCTTGGAAGTATTTAGGATCTTAATAAAATGGTAAGAGTACATAACACTAGGGAATACGAAACAACTGATAGACAATTGCATGATAAAAGTGCCTCAAATGTTCTGTACTATATGAAGAAGGGGATTTTGTAATAAATCAGTTGAAAAGTAGAACGTAGCATTAAGTCTATATCCCAGAGGCTCCAAGTAAAAGAATGACCAGAATAAGAGGAGGTCCATCAAGGAATCGTTCTTGAAGGAAATGAGACTTTTAATCTGAGTCTCAAGAGAAAAACTGAACATGAACCACTGAGATAGAGAGGAGAGTATTTCAGAGAAAAACACAGCAGACAGAGGTTGGGGGGAGAGGGAGGCAGATGCAAAACACAGGCCCTGAGTGACAGTTGCTGCACCTAGATCCCTGTACAGTGGGAGTTGGTTTGCAAGGCCGGCCTCCCCCTGTAAACAGAAATTCTCCCTGTAACCTTTAGGGTCAGATTGCTCAAGAAGGCTCTTGAAGAAAGGCATAAAGACCCTTTTGGATAATTTGTACTTAATGCACTTTTTCCAAGGCAGAGTAAAGAATGGCACAGTCCTCTCGTTCCCTGAAATGTGGCCCACGGGCAGGCCCAAGATGTGTCTGACAGGTCCTGTCACAGGGCTGCACCGCCTCCCACCTCTCCCACGGTCCACTGCACAGGACGGCTTTCCTCACAGCCCCCAGGCTTACCACCTGGCCAATTACACCTCTACAAGGAAATCCTCCCCTTCCCCCAGGCAATCTGCTTATCATGAGCCTGTGATTAACCTCATTAACACACCGGTTTACCACAGACGTCATTAGCAGTCAGTCAGACATTACTCAAAACCATTAGAAACAACAAGAACAGCCGTTACCCAGTTCAGTGCAACCAGCCTGGTGCTCCCCAGCTCTGGGCCTTGGGGAGCAGTTAGTCAGGCACCTTAGTCACGAGCTAAATGCACACCGGAAATGAGGCTGACATCCAGAGCTCTTGTTCTTGGGTGCCCGGGAGGATTACCCTCTGTGGCCAACTATCCGGGGATGGCAGTCCAGGCCTCGTGAGCATGTGCAGGGCATTCCTCCAGGAAAAGATTACTAGTGCCTGGGACAGGGAAAAATATATTCCTTTAGAAACCTTCACAGCAGAGCTCTGAATTGGGACGATCAAAATAGCAGTTTCCTATCCCACAGCTGCCTCCCAGAAACTAATTAATGCTGTGGATGTAGCTTGCTAATTATTTTCAACATCACCACCATCCTGAGCGGTCCCTGTGGAGGCCAGTTGCCTCTGCAAAGTCTCCCCTGACTCAAGTGGCACACTCCCCACTCTCCTGGGAAGGGCAGTTCCAGGCAGAGCCAGCACACACGATTGAAAGTCTATTTACCCACAAATTAGTTCAGTGTTTTTATTTCAACTCCAAAAGCTGTCAGTTTTGTAATTACAGGAGACATAACTTCTAGACAGCGCTTGCTGCTCAGCCTAAGAGTTCTCAGCCTGAGGTCCAAAGCTTCCCCAGAGGGATATGAGGGTAGAATTTAAGAAGTCTTTAAATTTGGATGGGAAAAAAAATACATATTCATTTTTACTAAAATTGAACTGAAAATTAGTATACCCATAGATTATGAGGGCAGGCGGTGACCCACAACAATCTTAGCCCTGCCTGATTTTTATCTCCCTAGATGCGTCCATCTCACATTTTGGTTATCGCAGATATCTGAGATACCACTTATGCTTATCCCTAACTCACAGTTATGGGACTTATTAGACTTACAACAAAATATTTTTATTGAATGCATTTATCATGCAGCACATACATTAATTTATTACAAACTTATTTAATATATTGATTGCTATATTTCCATATCATAGATTTTCTTTGTAATCCTGTATATTGTATGCATTCATTTAACATGTAATTCTGAGAAGGGGGTCCATGATTTTAATATACTTCCAAAGGTATTTATGCCAACAAAATTAAGAATTTTTGAGTCAGACATATGGCAAGTGCTCTGTAAATCTTTGCTGATTTCCTAAAAATATATATTAATATAAACAGTTCTTGACTTTCCACATATGATTATATTTTCTTGCCTTTTTCCTAGCAGTCCGTATAAAACGGAGGAGTTAACATTCAGCATTTTTATGGATTGCTCTCCTTTTTGTGTTTTGAATATTTCAG
Seq C2 exon
GTTCTTATTTTCTACCACTGTCCCTTCTACAAGCAGTACCCCTTCCTGTGGCCAGGAAAGAAGATTCCAGCGCCCTGGGCAAACACCACAAGTGTGCGCAAACTAATCCTCTTCTTGGAGACCACTCTGAGTGAGCGGGCCTCACGGGGCTCCTTCCATGTCTCCCAAGCGATCCTCACCCCCAGAGTGAAGACCATTGCCCGGGGCTTGGTTGGGGGCCTCAAGAACACGCTGGTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240891-PLCXD2:NM_001185106:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(90.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)