RnoINT0112997 @ rn6
Intron Retention
Gene
ENSRNOG00000042289 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:RGD Symbol;Acc:1563504]
Coordinates
chr11:57238832-57247467:+
Coord C1 exon
chr11:57238832-57239292
Coord A exon
chr11:57239293-57247225
Coord C2 exon
chr11:57247226-57247467
Length
7933 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTGCTTTGAACATTTCAGGTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCTCCCATGATTCATTCAGCTACTGGGTAGACGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCAAACGCCTTGCCCGGATCTCCTTGGTAAAGAAATTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCCGGGAGCAGCTAGAGGCTGGGATCCGCTACTTTGACCTACGTGTGTCTTCTAAGCCCGGAGACACTGACCAGGAGATCTACTTCATCCATGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCATTCCTCACTCAGCATCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTACGCCATGGATGAGGCCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGCATGACACTGCGGACCCTGTGGGAGAAGAAGTACCAG
Seq A exon
GTAAGAGGAAGGGGCGGTGCACCGCTGAGAGCAAGAGCTCAATTCTGCTTTCCTAGGCTGACAGCTGTGAGATGACCCAAGGCATAGAAGCTGCTCGAGCAGATTGTACTGAGCATGTGCAGAAGAGTACCTAGACTCTGAGGTTAACTCGGTGGAAATGGGATTATGTTTGATGTCTTAGTTATTTTTCTATTGCTGTGATAAAACATTATGGCAACTGATGAAAGGAAGCATTTAATTTGGCTAATGATTTTCAAAGGATTAGAGTCAAAACAAGGGAATAGCTGAGGGCTTCCATTTTGATGCACATTCATGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGACAGAGAGAAAGAGACAGAAAGAGAGACAGAGAGAGAGAAAGAGAGAGACAGAGAGAGACAGAGAAAGAGAGACAGAGAGAGAGACAGAGAGAAAGAGACAGAAAGAGAGACAGAGAAAGAAAGAGAGAGAGAGACAGAGAGAAAGAGACAGAGGGAAAGAGACAGAGAAAGAGACAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGCACTGAGAATGTTACAAGTCTTTTGAAACCTCAAAATCCACTTTTAGTGAACACCAGTAACAAGGCCACACCTCCTAATCCATCAAACATTTTTAGCATCTTGAGACCTAGAATTCCAATACATAAGCCTCCATGGGCCACATTCAACCCCCTGGCCTTCATAGACGTATAGACATATCATAAGGCAAAATGCATGTGATCCGAATTCAGAAGGTCACACAGTTTTCCACAGTGTCAAACCTATTTAAAAGTCTGAAGTGTCACCTGAGACTCAGGGCAGTCTCTTAGCTATAACCCCTACGAAAGCAAAAGCAAAGAAGCAAATTGTATACCTTCAGAGTGCAATGGCACAGTATACATTACCGTTTTCACAGGGAAGAAAGAGGACCTGGTGAGGAAATACCAGACCAAAGCTAGACTAAACCCCAGCAGAGCAAACTCCAGACCCTCCACTTTCACGCCCAGCGTCAAAGGCCTTACATGGTTCTGTCCTTATAACTTGGCTGTGGCAGCTTTCTTCTCTTTCTTGGGCTGGTTCCATTCCTTATATGCAGCTCACTTTGTCAGAAATTCCAGGACTCTGGCACCTCTGACTCTTCCAATACAGTCTAGGGTTTACTTTCACAGCTTTGTGCAATGGATTCCCTTGCCTCATACCTGGCTTCAGTGCCTCTCCTCCACTATGAAGGCAGATTCCGTTGGCTCCTTCATGAATTGTAAAGTCCAAACAACATGAGTGACATTGCAGAGTTTGACTACCAACTTGGCACCCTAAAATCATATTTGTTGAAGCTTTGATCTGTTGTTGCTTTTTTTCAAGCAGAAAATTCCTTTTTAGATATTGAAAGCTTATCTGGGTGAGGTCCTGCCCTGAGGGCACCCTTCCCTTTATTCTATTTAAGAACAAGCCTCTCCTTAATCTTCTCCTGTCTTTCAGAACAAGTCTTGGCACCAACATTAAATCTGGTGCCCTTTTTCCTCTTTAAAATGTATATTTTCTATTTCTTTTTGCTCCAGTTGCTCGTTTTAATTGTAGACCTATGTGATTACCACAGGATAGAGTCAATATGAAGCTGTCTTGAAATCTCTTCTGCCAAAGAAATTAGTCTGAAACTCTGATTTAGCCTTAGGAAAATGCATAGAACAAGGGCAAAAAGCAGCCACATTCCTTGCCAAAATATGGTCTCTAGCCTTGTTGTTAATATTATCCCCCCACCCCGAAACCTCATGAGCTGAACTTCTATAGTCAACATTGATCTCAACATCAAGCCCTATTTATAGTGTTCTACATTTTCCCTAGTCTGAAATCCCAAATTCTTCCTCTTTCCTCCAAAAACCAGCACAATCAGGCCCGCCACAGCAACCTCAATTCTGGTGCCAACTTCTGTCTTTGCTACATTTCTATTGCTGTGATAAAACACCATGACCAAGGCAACTTATAAAAGAAAGTGTTTGATTTGGCTTAGGGTTTCAGAGAGACCATGATGACTGAGCAAAGCCAGAGTGGCAAAAGTTAGCAGACGGCTCACATCTTGATCCACAACAGCGAGGCAGAGAGAAAACACTGTGGATCACACATGCCTTTTGAAACCTCAAATCCTACCCTCCGTGACACACCTTCTCTAACAAGGCTACACTTCTTTAATCCTTTTCAAACATTTCCACCAACTGGGGGACCAAATAGTCAAATATATGAGCTATAGGGAACATTCTCATCCAGACTTCCACACTACCAAATATTTAATTTGCCTGCAGTCTATGTGACATCTAAATTGACTTTTAAAGGCTTGGCTACTATCTTCCCAAGGCAAAGTTGTGAAATAAGCCAATTGGTCAGTAAAACTCTATCCTGTCTTATCTAAACTCTGCTTACTACCCTCTATCCATGCCCCTCCCCCAATAAAGATAAGCCTCCAAACCTATACCCCTGGGAAACACGCTCAGTAAAGATAGGTCTCAGATGCATTCTATTCTGATGCTATGGTGTGGTAGCAGTAAGCAAGAGCTTTGGGAAAGGACAGCCTCTGCCTTAAACTTTATCCAAGAAAAGCAAAAGAGATACATTCATTCAGCATTGTTGCCATCCCATTAAGTGCACTGAGAAAAATGTCTTTTAAAAAGTATTGAATAAAGACCTCAGGTCCTTATACATGCCAGGCAAACAGCACTACCACTGTTCCACATGCCTGGCCTTAAGAAAAACATATTAAAATAGTATTTTGGGGGACCAGAGAGATGTCATGGCAGTTAAAAGCACTTGCTTTACAATCATAAGGGCAAGTGTTCTGGTCCCAGCAACAATAAAACAAGTCAAATGTCCCCCACAAGTGACTATAACTCCAGCTTCATGAGGGGTGTAGACAGGTGGGTCTCTGGCACGTCCAGCTTAAGAAAATGTAAGCCTTGGGTTCAGGGAGAGACTCTGCTTCAAGGGAATAGGTGAAGAGCAATAGAGGATGCTGGTGTTCTCATCTGGACTCAGTATGCATTCAAGGCTCACATGTACTTAAACTCATAGGTACATGTATGCATGTGCGTGCACATACACACACACATAATTAAATAAGTAAGAAAAATTGTATAAACAAACTAACTCAAGGAGAAAATGAGCTCTCAGTTATTTATTTAAAAATATTTGTTGAGCACCAAATGTAGGTGATAATTTTTTCAAGTATGTATCACATCTCTTCTCTCACATTTAGGTTTAATACTGTTCAGACTCACAGATCTAATTTAATCTAATCTACTTATTTATTTGTTATGGGATCATGCTATGTTGTAGTCCAGGCTTGCCTGGAACTCTTGAAATGCCAACTCAGTTTCACTAAGAATTAGATGAACTCTTTTGGTCTTCTCAACACTAGAAAATAGGCATCCGATATTATCCCCATTTTACAGATGGGAAAATTGAGGAATGGAGATACTACAGCAACTTGCCCAAGATGCACTATGAATGAGAGTGTGGGTCGGAGTTCCCTCACTAGCTGGTTTCTCTCTAGTATTCCCCTAGGCCTTGATGACTCTCACAACTGCTTTCTTGTGTTGTGAAATAAAAACACTTTCTTTTCCTTAAGAACCTAGTCTTAAAGGGCCTCGGATTGTTTCCATTGAGAAAGGGAGATGGCATTTGAATGAGGTAGTAAGATAGGGTTAAATATGAGATTGGGTAACATTTTATAATTTGGTACACAGATGATATTCTGGGTGGTTGACAGATTGCACATAAAAACAGGCAGATCCTGGAGATCATTGGCCAGCCAGTCTGGCTAAATAGAACTTTAGATTCACCAAGAGATTCTGTCTCAAAAAATAATGGTTCAGGAAACAGAAGAGGATTCAGCAAGTAAAGGAACTTGTTGCCAACCCTGAATTTGAGCCTCAGGACCCATAGGTGGAAATAGAGAACTGAACCCAGATGTTATCCTCTGACCTCTACTTAAAAAAGAGTGGGAAGCTATCAAGGGAAGAGAGCCAACAGTTCAACCTCTAGGTAACCTCCACACACGTGCATAGGCATGCATGTGCACCTGCCTGCACATGTGAACAATCCCACACTAACAAGTAGACATACCATACAGGACACACACTCACGCACACACACACACACACACACACACACACACACACACACACACTTGCACATGCACAGGCTAATTTAGCAGCGTTATCCACTGCTAAATCCATGGTTATGGAGGAAAGAACTGGGCTGATCTATTAGAAAAAGGGAAAGTATCCCCAGCTTAATGTCTCTTTAATGGCTGAAACAGGAGCACTCATGGAGAGCCACCAGTCATTGGCCCCATGCTGGGCAGTGTCACACTGTGATCAGGCTTTAAATATTCATTATGTAATGAGCTGCCTTGCAACCTCCCCAACCTGTCCACCCCCTACCCCCCAGTGTTTTATTACTGGAATTTAATATCAGGAAGTACTGTACCACCAGTCACATTTCATTTACTCAACTTGTAATTATATCACAGCTCACAGATTAGAGATGCATGCCCTGGTAGATAAGGTTTTAAGGGTACAGTAAATTGAAGGATTTAGTTTACAGTTTGGAAGTATTTGAAATCAAAATGAAAAAGTAGGAAATCTATAACTTGCCAGGCCGTGGTGGTACCCCCACCCCCTTATTTATTTATTTATTTATTTATTTATTCATTCATTCATTCATTCCCTTTACTTCCCTATCACAGCTCCCCTTACCTCCCAGTCCCTCCCTCACACAACCCTTCCTCTATCCCTCACACCCCTTCATCTCTGAGAAGGGTGAGGTTCCCCTTGGTTACCAACCCAACCTGACCTCTCAAGTTACTACAGGACTAGGTCCATTCTCTTCCACTGAGGCCACCAAGAGAGCCCAGTTAGAGGGGCAGGACCCTCACATACACATCTTTAATCTCAGGACTCAGGAGGAAGGAGCAGTTGGATCTCTGAGTTTGAGGTCATTTCCGTTCAACCCCTTGAACTGAACCCATAGTAGAAGGAGAGAGCCAACTCCTGAAAAGTTCTCTTCTTATGTCCACTTGTATGCCATGGTATGCACACTCCTGCAGAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGAGGGAGGAGGAGGAGGAGGAGGAGGGAGGAGAGAGAGAAGAAGAAAGAGAAGAAGAAGAAGGAAAGAAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAGAAGAGAAGAATTAATAGAAATAATCTATCTACCTAAGATAGACTACAACTATAAGATAAGATCAAGCCTGGTGAGCCTACATGTGATGAAGAAAGGGATTTTCTAATGGATTGAGGAGTAGAGCACCCCATGAGCTGGCACCCCAGGGGCCCCAGTAAAGGAACTTTCACAGTAAGAAGAGATCACCTGAGGGACTGTTCTTAAAAGAAATGAGATTTTTCCATCTTAGTGTCAAGACAAAAACTGAACATGAACTGCTGAGCTGGACAGGAAATATTTCAGAGAAAAAATGGCACAAGGAGATAGGGAGGAAGATGCTGTGAACAGGCTCAATGAAAGAGAGTCTCTACACCTGTGTTTTATAAGCAGAGATCCCCCAGCAACCTCCAGATCAGACTATCCACAAGGACTGAGGAAAGGACAGAAAACCCCTCTTGTGCAGTTTGTACTAAGGACACATTTTCTGAGGCACAGTACAATTGAGTACTGTCCTCTAGTGTGCGGATGCATAGCCTGGGGGCAGGTGTCTTGGGCACCACCTGCTAGGTCTGTCCCAGAGTTGCAGGGCTTCCTGTCCACCCCCCATCCCTGCTGCCCAGGGCACCTCTCCTTCAGGCTTCACCCTTCCAACCTAACCAGTTTGGGTCTCCCCAGCAATCTGCTTACAGTGAGCCTGTGATTAACCTCATTAACACATACATGTGTTTACTATGGTCATCAGTGCTCAGCATTACTCAGAAGCATTAAGAACCAGGAGGGTAGACATTACCGCACTGACAGCCCCCTGGCCTCTGGGCATTCAAAAGGTCTGGCGCCTTTGTCGTCACCTGAACACACTGGAAATGAGATGAACATATAGAATCCCTTCCTCCTGAGTGCCTGAGAGATTGCTCAGAGGATTACAGTTCACAGGGTAAACATGAGCATTCCTCTGGGAAGAGCTCACCCGTGCCCCTAAGGGGAAAATACGGCATTTCTAGAAAACCACACAGCAGAGCTTGGAATTGGGGCGATCAGAATAGCAATCCTCTGTCCCCCAGCTGCCTCCCAGAAACTAATTAATGCTGTGGATATAGCTTGCTAATTATTTTCGAAATGACTGCCATCTCCAGTGGCCCCACTGTAGGCCCATGGCCTCTACAAGGTCTTCCCTGAACCTGGTGGCACATTGCTTTCCTCTCCTGGGATGGTAATTTCATCAGAGCCAGTGCATCCAACTGAAAATCTATTCACTCACAAATGAGTTCTCACTGTTTATGTAAACTCCAAGAGCTATGCTTATGCCAAGTGTCAATGCCATGAGCACTGGAAACATGATTTCTGGGCCAGACTGGTTTCAGCCTGGTATGCAGACTTCCCAGGGATGGTGTGTGCATGGAATGTATTAAGGCAGTGTCTGGTTGGTTAAAAAAAAATCACAAGAAACTACATCTTCACTTTTACTCACCTTGAATAACCGCCTGTCTGTCGTATATGCTGGCAGTAGAACCTTGTTTCTGCAGGGTTGGCCCTGCCTGTCAATTTTCCTCAGGGAGATAGCCTTGTCCCATTCCCTGCAGATTGTCTTAAAATACCTCACTAATCACAGCTAATGGAGCTCATTAGACCCTATCAAAGGAATTCTATGCATTTTTCATGAGGCTTCTACATTAATTTCTTATAAATATGTTATATGAATAAGTATATGTCCTTTATGTCTTATTATTTTCCTTTATGATCTTGTTCACTTTGCACATCTCTTAAAAACACATCTGTCAGAAGGTGCTCTGTGGGGTCTATCATGTGCATTACCAACAAGGTAATCATTTTGAGGTAGCAAGTTCTTGTTTCTTTACTTTTAAAAAGTAATATATAAGGCCAATATATATGGTGGCACGGTGGGTGGGGCATGCCACCGAGACTGATGACCTACATCCCATTTGCTTGAAGGTGAGAACTGAGGTGTAATCTGACTACTACACATGGTCTGCAACAATTCGTGGACCACCACATCTCTCTGCCATGTACAAACAAATACATGCCTGTAATAAAAACATTATCTATGCAAAACACAGCTCTCACCTCAAAGAGACTAAGAAATGGTTTGTTATTGAGCCAAATAGGAAAGGGCTTGGAGCACAGACTCGGGTTGTCTATCCACTGTGGAAAGGGTCACATGAGATTCGATTAGCCAAGGAACTAAGTAAGCCATAAGACAAGGCATTTATCAATATTGGTAGGGACCACCAGGCGGCAGGGAATAGCAAGAGAAATCGTAATCACAGGTTTAGGATGCAGACTGTGGACATGTGTGTTCTTGGAAGCTGGTGATCTGCTGTGAGTACTTGCCAAAGGCTTTAACCTGAAGCCAAAAGGCACCAGTGTGAACAATGAATGGTTACTGAGAGGAGCAAGGCTAGCCCAAGAGAATTCGATTGTAGACTCCAATACTCTTTACGTTTTTACAACCACGAAGTTCGAATCTGTTGTTTTGCCCTGTAAAACCTTGCACAGAGACATGGCTTTTCCCCACTCAGTTTATGTGAACAGTTCTGCTACTTCTGAGAATGTTTGTCCACTTCTCTCTCCCCATTCGAGTACTCAGCTTTTAAATGTTTCTGTCCTTTTTCTGCTTTGAACATTTCAG
Seq C2 exon
GTTCTCATTTTCTACCACTGTCCCTTCTACAAGCAATACCCATTCCTGTGGCCAGGGAAGAAGATCCCGGCACCCTGGGCAAACACCACGAGTGTGCAAAAGCTGATTCTCTTCTTGGAGACCACCTTGAGTGAGCGAGCCCCACGTGGGGCCTTCCATGTCTCCCAGGCCATCCTCACCCCAAGAGTGAAGACTATTGCCCGAGGCCTGGTGGGGGGCCTCAAGAACACACTAGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042289:ENSRNOT00000038207:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(90.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]