BtaINT0113454 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2078571-2088261:+
Coord C1 exon
chr14:2078571-2081951
Coord A exon
chr14:2081952-2082048
Coord C2 exon
chr14:2082049-2088261
Length
97 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCT
5' ss Score
7.27
3' ss Seq
GCCCCCTATCCCCTTGACAGATG
3' ss Score
9.65
Exon sequences
Seq C1 exon
AGGCTGGCCGAGCAGCAGCGAGCGGAGGAGCGGGAGCGGCTGGCTGAGGTGGAGGCTGCACTGGAGAAGCAGCGGCAGCTGGCTGAGGCCCACGCCCAGGCGAAGGCGCAGGCGGAGCGCGAGGCCCAGGAGCTGCAGCGGCGCATGCAGGAGGAGGTGGCACGCCGGGAGGAGGTCGTGGTGGATGCGCAGCAGCAGAAGCGCAGCATCCAGGAGGAGCTGCAGCAGCTGCGGCAGAGCTCGGAGGCGGAGATCCAGGCGAAGGCCCGGCAGGTGGAGGCAGCCGAGCGCAGCCGGCTGCGCATCGAGGAGGAGATCCGAGTGGTGCGCCTGCAGCTGGAGACCACGGAGCGCCAGCGCGGCGGGGCGGAGGGCGAGCTGCAGGCGCTGCGGGCGCGGGCAGAGGAGGCTGAGGCACAGAAGCGGCAGGCCCAGGAGGAAGCAGAACGCCTGCGGCGGCAGGTGCAAGACGAAACCCAGCGCAAGCGGCAGGCTGAGGCTGAGCTGGGCCTGCGTGTGAAGGCGGAGGCCGAGGCGGCAAGGGAGAAGCAGCGGGCCCTGCAGGCGCTAGAGGAGTTACGTCTGCAGGCCGAGGAGGCAGAGCGGCGCCTGCGGCAGGCAGAGGCAGAGCGGGCACGCCAGGTGCAGGTGGCGCTGGAGACAGCACAGCGCAGTGCCCAGGCGGAGCTGCAGAGCAAGCACGCCTCATTTGCTGAGAAGACAGCGCAGCTGGAGCGCACCCTCGAGGAAGAGCACGTGACCGTGGTGCAGCTTCGTGAAGAGGCCACACGCCGGGAGCAGCAGCAGGCGGAGGCCGAGCGTGCCCGCGAAGAGGCCGAGCGTGAGTTGGAGCGCTGGCAGCTGAAGGCCAATGAGGCGCTGAGGCTGCGGCTGCAGGCAGAGGAGGTGGCACAGCAGAAGAGCCTGGCGCAGGCCGAGGCGGAGAAGCAGAAGGAGGCGGCAGAGCGGGAGGCGCGGCGGCGTGGCAAGGCAGAGGAGCAGGCAGTGCGGCAGCGCGAGCTGGCGGAGCAGGAGCTGGAGAGGCAGCGGCAGCTGGCGGAGGGCACTGCGCAGCAGCGCCTGGCCGCCGAGCAGGAGCTGATCCGGCTGCGCGCCGAGACAGAACAAGGTGAGCAGCAGCGGCAGCTGCTGGAGGAGGAGCTGGCTCGGCTACAGAGCGAGGCGGCTGCCGCCACGCAGAAGCGCCAGGAGCTGGAGGCTGAGCTGGCCAAGGTGCGGGCTGAGATGGAGGTGCTGCTGGCCAGCAAGGCGCGGGCCGAGGAGGAATCGCGCTCCAGCAGCGAGAAGTCCAAGCAGAGGCTGGAAGCCGAGGCCGGGCGCTTCCGCGAGCTGGCAGAGGAGGCTGCCCGCCTGCGCGCGCTGGCGGAGGAGGCCAAGCGGCAGCGGCAGCTGGCGGAGGAGGATGCGGCGCGGCAGCGGGCAGAGGCTGAGCGGGTGCTGTCCGAGAAGCTGGCTGCCATCAGCGAGGCCACGCGGCTCAAGACGGAGGCAGAGATCGCACTTAAGGAGAAAGAAGCCGAGAACGAGCGCCTGCGGCGGCTGGCGGAAGACGAAGCCTTCCAGCGGCGGAGGCTGGAGGAGCAGGCAGCCCAGCACAAGGCCGACATCGAGGAGCGGCTGGCACAGCTGCGTAAGGCATCTGAGAGCGAACTGGAGCGGCAGAAGGGGCTGGTGGAGGACACTCTGCGGCAGCGGCGGCAGGTGGAGGAGGAGATCCTGGCCCTTAAGGCAAGCTTCGAGAAGGCAGCCGCCGGCAAGGCGGAGCTGGAATTGGAGCTGGGGCGCATCCGCGGCAACGCAGAGGACACGCTGCGCAGCAAGGAGCAGGCGGAGCAGGAGGCGGCGCGGCAGCGGCAGCTGGCCGCAGAGGAGGAGCGGCGGCGCCGGGAGGCCGAGGAGCGTGTGCAGAAGAGTCTGGCAGCTGAGGAGGAGGCTGCGCGGCAGCGGAAGGCTGCGCTGGAGGAGGTGGAGCGGCTCAAGGCCAAGGTGGAGGAAGCGCGGCGCCTGCGCGAGCGCGCGGAGCAAGAGTCTGCGCGGCAGCTGCAGCTGGCGCAGGAGGCTGCCCAGAAGCGGCTGCAGGCGGAAGAGAAGGCGCATGCCTTTGCAGTGCAGCAGAAGGAGCAGGAGCTGCAGCAGACCCTCCAGCAAGAGCAGAGCATGCTGGAGAGGCTCCGTGGCGAGGCCGAGGCTGCCCGGCGTGCGGCGGAGGAGGCAGAGGAGGCGCGCGAGCGGGCCGAGGGCGAGGCAGCGCAGTCCCGACAGCGCGTGGAGGAGGCGGAGCGGCTGAAGCAGGCGGCGGAGGAGCAGGCGCAGGCTCAGGCGCAGGCGCAGGCCGCCGCAGAGAAGCTGCGCAAGGAAGCTGAACAAGAGGCGGCGCGGCGGGCGCAGGCAGAGCAGGCGGCCCTGCGGCAGAAGCAGGCGGCCGATGCGGAGATGGAGAAACACAAGAAATTCGCGGAGCAGACACTGCGGCAGAAGGCCCAGGTGGAGCAGGAGCTGACGGCACTGCGGTTGAAGCTGGAGGAGACGGACCACCAGAAAAGCATCCTGGACCAGGAGCTGCAGCGGCTGAAGGCGGAGGTGACCGAGGCCGCCCGCCAGCGCAGCCAGGTAGAGGAGGAGCTATTCTCCGTGCGCGTCCAGATGGAGGAGCTCGGCAAGCTCAAGGCTCGCATCGAGGCGGAGAACCGCGCCCTTATTCTGCGCGACAAGGACAACACGCAGCGCCTCCTGCAGGAGGAGGCCGAGAAGATGAAGCAGGTGGCGGAGGAGGCCGCGCGGCTGAGCGTGGCGGCTCAGGAGGCAGCACGGCTGCGTCAGCTGGCGGAGGAGGACCTGGCTCAGCAGCGGGCCCTGGCGGAGAAGATGCTCAAGGAGAAGATGCAGGCAGTACAGGAGGCCACGCGGCTCAAGGCCGAGGCGGAGCTGCTGCAGCAGCAGAAGGAGCTGGCCCAGGAGCAGGCCCGCCGGCTGCAGGAGGACAAGGAGCAGATGGCCCAGCAGCTGGCACAGGAGACGCAAGGCTTCCAGCGGACCCTGGAGACTGAGCGGCAGCGGCAGCTGGAAATGAGCGCGGAGGCCGAGCGGCTCAGGCTGCGTGTGGCTGAGATGAGCCGGGCCCAGGCTCGCGCGGAGGAGGACGCCCAGCGCTTCCGGAAGCAGGCGGAGGAGATTAGCGCAAAGCTGCACCGCACAGAGCTCGCCACGCAGGAGAAGGTGACGCTGGTGCAGACGCTGGAGACACAGCGGCAGCAGAGCGACCGGGATGCCGATCGCCTGAGGGAGGCCATTGCGGAGCTCGAGCGCGAGAAGGACAAGCTCAAGAAGGAGGCTGAGCTGTTGCAGCTCAAGTCTGAGGAG
Seq A exon
GTATCTTGCGGCGGAGGGTAGGGACCTCGGGTGGGGTCTGTTCTGGGAAAGGTGCGCCTGGCCGGGTGTCCCTGACCGCCCCCTATCCCCTTGACAG
Seq C2 exon
ATGCAGACGGTGCAGCAGGAGCAACTGCTGCAGGAGACGCAGGCCTTGCAGCAGAGCTTTCTCTCCGAGAAGGACAGCCTGCTGCAGCGGGAGCGCTTCATTGAGGAGGAGAAGGCCAAGCTGGAGAGGCTCTTCCAGGACGAGGTGGCCAAGGCACAGAAGTTGCGGGAGGAGCAGCAGCGACAGCAGCAGCAGATGCAGCAGGAGAAGCAGCAGCTGCTGGCCAGCATGGAGGAGGCGCGGCGGCGGCAGCGTGAGGCTGAGGAGGGTGTGCGGCGCAAGCAGGAGGAGCTGCAGCTCCTGGAGCAGCAGCGGCAGCAGCAGGAGCAGCTGCTGGCGGAGGAAAACCGCCGGCTGCGTGAGCGGCTGGAGCACCTGGAGGAGGAGCATCGGGCCGCACTGGCCCACTCCGAGGAGATCACCGCTGCTCAGGCAGCGGCCACCAGAGCCCTCCCCAACGGCCAGGATGCGACCGACGGCCCAGCTGCAGAGCCAGAGCATGCCTTCGAGGGCCTGCGGCAGAAGGTGCCGGCCCAGCAGCTGCAAGAGGCGGGCATCCTGAGCACAGAGGAGGTGCAGCGGCTGGTGCAGGGCCACACAACGGTGGCCGAGCTCACGCAGCGGGAGGACGTGCGCCGCTACCTGCAGGGCCACAGCAGCATCGCGGGGCTGCTCCTGAAGCCTGCCAATGAGAAGCTGACCATCTACGCCGCCCTGAGGAGGCAGCTGCTGAGCCCGGGCACCGCTGTCATCCTGCTTGAGGCCCAGGCAGCCTCAGGCTTTCTCCTGGACCCAGTGCGGAACAGGCGGCTGACCGTCAACGAAGCTGTGAAGGAGGGTGTCGTGGGCCCTGAGTTGCACCACAAGCTGCTGTCGGCCGAGCGCGCGGTCACTGGCTACAAGGACCCGTACACCGGGGAGCAGATCTCCCTCTTCCAGGCCATGAAGAAGGACCTCATCGTGCGCGAGCACGGCATCCGCCTGCTGGAGGCCCAGATCGCCACGGGCGGCGTCATCGACCCCGTGCACAGCCACCGCGTGCCCGTGGACGTGGCCTACCAGCGCGGCTACTTTGACGAGGAGATGAACCGTGTGCTGCAGGACCCCAGCGACGACACCAAGGGCTTCTTCGACCCCAACACGCATGAGAACCTCACTTACCTGCAGCTGCTGGAGCGCTGCGTGGAGGACCCCGAGACAGGCCTGCGGCTGCTGCCGCTCACAGATCAGGCTGCCAAGGGTGGTGAGCTGGTCTACACTGACTCGGAGGCCCGGGATGTGTTTGAGAAGGCCACTGTGTCGGCGCCATTCGGCAAGTTCCAGGGCAAAACGGTGACCATCTGGGAGCTCATCAACTCCGAGTACTTCACGGCCGAGCAGCGGCGGGACCTCCTGCGGCAGTTCCGCACAGGCAAGGTCACCGTGGAGAAGATCATCAAGATCGTCATCACCGTCATCGAGGAGCACGAGCAGAAGGGCCAGCTCTGCTTCCAGGGCCTGCGTGCCCTGGTCCCTGCTGCCGAGCTGCTTGAGAGTGGGGTCATCGACTGGGACCTCTTCCGCCAGCTGCAGCTGGGCGAGCGCTCCGTGCAGGAGGTGGCTGAGGTGGAAGCTGTGCGGCGGGCCCTGCGGGGCTCGGGTGTCATTGCAGGCGTGTGGCTTGAGGAGGCGAGGCAGAAACTAAGCATTTATGAGGCTCTGAAGAAAGAGTTGCTGCAGCCAGAGGCAGCTGTCGCCCTGCTCGAGGCCCAGGCTGGCACCGGGCATGTCATCGACCCTGCCACCAGCGCACGGCTGACTGTGGATGAGGCGGTGCGCGCCGGCCTGGTGGGCCCTGAGCTGCATGAGAAGCTGCTATCGGCCGAGAAGGCTGTGACTGGCTACAAGGACCCCTACTCAGGGCAGAGCGTGTCCCTGTTCCAGGCCCTGAAGAAGGGCCTCATTCCCAGGGAGCAGGGCCTGCGTCTACTGGACGCCCAGCTGTCCACGGGGGGCATCGTGGACCCCAGCAAGAGCCATCGTCTGCCCCTGGATGTTGCCTGTGCCCGCGGCTACCTGGATAAGGAAACCAGCACCGCCCTCACAGCGCCCAGAGATGACGCCAAGACCTACTACAACCCCCGTACTTGGGAGCCGGCCACCTACAGCCAGCTCCAGCAACAGTGTCGCCCCGACCCACTGACAGGCCTGAGTCTGCTGCCGCTCTCGGAGGAGGCAGCCCGGGCCCGGCAGCAGGAGCTCTACTCTGAGGTCCAGGCCCGCGAGGCCTTCCAGAAGGCCACTGTCGAGGTCCCTGTGGGCAGCTTCCAGGGCCGGGCAGTGACCATCTGGGAGCTCATCAACTCCGAGTACTTCACAGCCGAGCAGAGACAGGAGCTGCTGCGGCAGTTCCGCACGGGCAAGGTCACCGTGGAGAAGATCATCAAGATCATCATCACCATAGTGGAGGAGGTGGAGACCACGCGGCGTGAGAGGCTCTCCTTCAGCGGTCTCCGTGCCCCAGTGCCGGCCAGCGAGCTCCTGGCCTCTGGCATCCTCAGCAGCTCCCAGTTTGAGCAGCTCAAGGATGGCAAGACATCAGTCAAGGACTTGTCAGAGCTGGACTCAGTGCGGACCCTCCTCCAAGGCAGTGGTTGCCTGGCTGGCATCTACCTGGAGGAGTCCAAGGAGAAGGTGACCATCTACGAGGCCATGCGACGGGGCCTGCTCAGGCCCAGCACTGCCATCCTCCTGCTTGAGGCACAGGCGGCCACGGGCTTCCTAGTGGACCCTGTGAGAAACCAGCGCCTGTATGTCCACGAGGCTGTGAAGGCCGGTGTCGTGGGCCCCGAGCTGCATGAGAAGCTGCTGTCGGCCGAGAAGGCTGTGACTGGGTACAAGGACCCCTACTCGGGCAGCACCATCTCTCTCTTCCAGGCCATGAAGAAGGGCCTGGTCGTCAGAGAGCACGGCATCCGCCTGCTGGAGGCCCAGATCGCCACGGGCGGCATCATCGACCCCGTGCACAGCCATCGTGTGCCCGTGGACGTGGCCTACCAGCGCGGCTACTTCGACAAGGAGATGAACCGCGTGCTGGAGGACCCCAGCGACGACACCAAGGGCTTCTTCGACCCGAACACCCGTGAGAACCTCACGTACAGGCAGCTGCTGGAGCGCTGCGTGGAGGACCCTGAGACGGGCTTGCGGCTGCTGCCACTGAAAGGGCCGGAGAAGGCGGAGGTGGTGGAGACCACGCGGGTGTACACTGAGGAGGAGACACGGAGGGCCTTCGAGGAGACGCAGATCGACATCCCCGGGGGCGGCAGCCACGGGGGCTCCACCATGTCCCTGTGGGAGGTGATGCAGTCCGACCTGATCCCCGAGGAGCAGCGGGCCCAGCTGATGGCCGACTTCCAGGCTGGCCGGGTGACCAAGGAGCGAATGATCATCATCATCATTGAGATCATCGAGAAGACCGAGATCGTGCGCCAGCAGAACCTGGCGTCCTACGACTACGTGCGCCGCCGCCTCACAGCTGAGGACCTGCACGAGGCCCGGGTCATCTCTCGCGAGTCCTATAGCCTGCTCCGGGAGGGCACCAGGAGCCTCCGCGAGGTGCTGGAGGCCGAGTCTGCCTGGCGCTACCTCTACGGCACGGGCTGTGTAGCTGGCGTCTACCTGCCCGGCTCCAGGCAGACCCTCACCATCTACCAGGCCCTCAAGAAGGGGCTGCTGAGCGCCGAGGTGGCCCGCCTGCTGCTGGAGGCGCAGGCAGCCACGGGCTTCCTGCTGGACCCGGTGAAGGGCGACCGGCTGACCGTAGATGAAGCCGTACGGAAGGGCCTGGTGGGCCCTGAGCTGCATGACCGGCTGCTGTCGGCCGAGCGGGCCGTGACCGGCTACCGTGACCCTTACACGGAGCAGACCATCTCGCTCTTCCAGGCCATGAAAAAGGACCTGATCCCCGCCGAGGAGGCCCTGCGGCTGCTGGATGCTCAGCTGGCCACGGGCGGCATCGTGGACCCACGCCTGGGCTTCCACCTCCCGCTGGAGGTGGCCTACCAGCGTGGCTACCTCAACAAGGACACACACGACCAGCTTTCAGAGCCCAGTGAGGTGCGCAGCTACATAGACCCCTCCACGGACGAGCGCCTCAGCTACACACAGCTGCTGCGGCGCTGCCGCCGCGATGAAGCCAGCGGCCTGTTCCTCCTGCCGCTCTCAGACGCCCGCAAGCTGACCTTCCGTGGCCTGCGCAAGCAGATCACGGTGGAGGAGCTGGTACGCTCGCACGTCATGGATGAGGCCACGGCGCAGCGGCTGCAGGAGGGCCTGACCTCCATCGAGGAGGTCTCCAAGAATCTGCAGAAGTTCCTTGAGGGTACCAGCAGCATTGCTGGCGTCCTCGTCGATGCCACCAAGGAGCGGCTGTCGGTGTACCAGGCCATGAAGAAGGGCATCATTCGGCCTGGCACGGCCTTTGAGCTCCTGGAGGCGCAGGCGGCCACCGGCTATGTCATCGACCCCATCAAGGGGCTCAAGCTGACCGTGGAGGAGGCCGTGCGCATGGGCATCGTGGGCCCCGAGTTCAAGGACAAACTGCTGTCGGCTGAGCGCGCCGTCACCGGCTACAAGGACCCCTACTCCGGGAAGCTCATCTCCCTCTTCCAGGCCATGAAGAAGGGCCTCATCCTCAAGGACCACGGCATCCGCCTGCTGGAGGCCCAGATCGCCACAGGCGGCATCATTGACCCCGAGGAGAGCCACCGCCTACCCGTGGACGTGGCCTACCAGCGCGGCCTCTTCGACGAAGAGATGAATGAGATCCTCACCGACCCCTCAGATGACACCAAGGGCTTCTTCGACCCCAACACGGAGGAGAACCTCACTTACCTGCAGCTGATGGAGCGCTGTGTCACCGACCCCCAGACGGGGCTGCGGCTCCTGCCCCTGAAGGAGAAGAAGAGGGAGCGGAAGACGTCCTCCAAGTCCTCAGTGCGTAAGCGGCGTGTGGTCATTGTGGACCCTGAGACGGGCAAGGAGATGTCCGTGTACGAGGCCTACCGCAAGGGCCTCATCGACCACCAGACCTACCTGGAGCTGTCGGAGCAGGAGTGTGAGTGGGAGGAGATCACCATCTCATCCTCAGATGGCGTGGTCAAGTCCATGATCATCGACCGCCGCTCAGGCCGCCAATATGACATTGATGAGGCCATTGCCAAGAGCCTCATTGACCGCTCGGCACTGGACCAGTACCGTGCCGGCACGCTGTCCATCACCGAGTTCGCGGACATGCTCTCAGGCAATGCCGGCGGCTTCCGCTCGCGCTCGTCCTCCGTGGGGTCGTCATCCTCCTACCCCATCAGCCCGGCCGTCTCCAGGACCCAGCTGGCCTCCTGGTCCGACCCCACGGAGGAGACAGGCCCTGTGGCCGGCATCCTGGACACCGAGACCCTGGAGAAGGTGTCCATCACGGAGGCCATGCACCGCAACCTGGTGGACAACATCACCGGCCAGCGGCTGCTGGAGGCGCAGGCCTGCACTGGGGGCATCATCGACCCCAACACTGGGGAACGCTTCCCCGTCACCGAAGCCGTCAACAAGGGCCTGGTGGACAAGATCATGGTGGACCGCATCAACCTGGCCCAGAAGGCCTTCTGCGGCTTCGAGGACCCGCGCACCAAGACCAAGATGTCGGCCGCCCAGGCCCTGAAGAAGGGCTGGCTCTACTACGAGGCAGGGCAGCGCTTCCTGGAGGTGCAGTACCTGACGGGCGGCCTGATTGAGCCCGACACGCCAGGCCGCGTGCCCCTGGACGAGGCCCTGCAGCGCGGCACGGTGGATGCCCGCACCGCCCAGAAGCTGCGTGACGTCAGCGCGTACTCCAAGTACCTCACCTGCCCCAAGACCAAGCTCAAGATCTCCTACAAGGATGCACTGGACCGCAGCATGGTGGAGGAGGGCACGGGGCTGCGGCTGCTGGAGGCCGCCACCCAGTCCAGCAAGGGCTACTACAGCCCCTACAGCGTCAGCGGCTCCGGCTCCACCACCGGCTCGCGCTCCGGCTCGCGCACCGGCTCCCGGGCTGGCTCCCGTCGCGGCAGCTTCGATGCCACGGGCTCAGGCTTCTCCATGACCTTCTCCTCCTCGTCCTACTCCTCCTCAGGCTATGGCCGCCGCTACGCCTCGGGGCCCACGTCCTCCCTGGGGGGCCCTGAGTCCACGGCAGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922:ENSBTAT00000015828:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.0),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.7),PF0068115=Plectin=WD(100=1.5),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAGCTCAAGAAGGAGGC
R:
TGGCCTTCTCCTCCTCAATGA
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development