MmuINT0121782 @ mm9
Intron Retention
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76001404-76012329:-
Coord C1 exon
chr15:76008949-76012329
Coord A exon
chr15:76008816-76008948
Coord C2 exon
chr15:76001404-76008815
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CCCTTTCCCATCCCTAACAGATG
3' ss Score
10.69
Exon sequences
Seq C1 exon
CGGCTGGCTGAGCAACAGCGGGCAGAGGAGCGGGAGCGACTGGCCGAGGTGGAGGCTGCGCTGGAGAAGCAGCGGCAGCTAGCTGAGGCACACGCCCAGGCTAAGGCCCAGGCAGAGCTGGAAGCACAAGAACTGCAGCGGCGCATGCAGGAGGAGGTGGCGCGGCGCGAGGAGGCAGCAGTGGACGCACAGCAGCAGAAGCGCAGCATCCAAGAGGAGCTGCAGCACCTGAGGCAGAGCTCGGAGGCAGAGATCCAGGCCAAGGCCCAGCAGGTGGAGGCTGCAGAACGCAGCCGGATGCGCATTGAGGAAGAGATCCGTGTAGTACGTCTGCAGCTGGAGACAACTGAGCGGCAGCGTGGAGGGGCGGAGGGCGAGCTGCAGGCTCTGCGCGCTCGGGCTGAGGAGGCAGAAGCGCAGAAGCGGCAGGCTCAGGAGGAAGCTGAACGCTTGCGAAGGCAGGTGCAGGATGAGAGCCAGCGCAAACGGCAGGCAGAGGCAGAGCTGGCCCTGCGTGTGAAGGCTGAAGCTGAGGCAGCGCGAGAGAAGCAGAGGGCCCTGCAGGCCCTGGATGAGCTGAGACTGCAGGCCGAGGAGGCCGAGCGGCGGCTGCGCCAAGCCGAGGCAGAGCGGGCACGCCAAGTGCAGGTGGCCCTGGAGACGGCACAGCGCAGTGCGGAAGTGGAGCTGCAGAGCAAGCGGGCATCCTTTGCAGAGAAGACCGCACAATTGGAGCGCACTCTGCAGGAGGAGCATGTAACAGTGGCCCAGCTGCGGGAGGAGGCCGAGCGACGGGCACAGCAGCAAGCTGAGGCTGAGCGAGCCCGGGAGGAAGCTGAGCGGGAGCTGGAGCGCTGGCAGCTGAAGGCCAATGAAGCACTGCGGCTGCGGCTGCAGGCAGAAGAGGTGGCACAGCAGAAGAGCCTGGCACAGGCCGATGCCGAGAAGCAGAAGGAAGAGGCCGAGCGGGAAGCGCGGCGGCGGGGCAAGGCGGAGGAGCAGGCTGTGCGGCAGCGGGAGCTGGCGGAGCAGGAGCTGGAGAAGCAGCGGCAGCTGGCGGAGGGCACCGCACAGCAGCGCCTGGCTGCGGAGCAAGAGCTGATCCGCCTGCGGGCCGAGACAGAGCAAGGTGAGCAGCAGCGGCAGCTGCTGGAGGAAGAGCTGGCCCGGCTACAGCACGAGGCCACCGCAGCCACGCAGAAGCGCCAGGAGCTGGAGGCTGAACTGGCTAAGGTCCGGGCAGAGATGGAGGTACTTCTGGCCAGCAAGGCGCGAGCCGAGGAAGAGTCTCGCTCTACCAGCGAAAAGTCTAAGCAGAGGCTAGAGGCTGAGGCAGGCCGCTTTCGGGAACTGGCCGAGGAGGCTGCCCGGCTGCGTGCTCTGGCGGAGGAGGCCAAGAGGCAGAGGCAGTTGGCAGAGGAGGATGCCGCCCGCCAGCGGGCCGAGGCAGAGCGGGTGCTTACTGAGAAGCTGGCTGCCATCAGTGAGGCCACACGGCTCAAGACGGAGGCAGAGATTGCACTCAAAGAGAAGGAGGCCGAGAATGAGCGCCTGAGGCGCCTGGCAGAAGACGAGGCCTTCCAGCGGCGGCGTCTGGAGGAGCAGGCGGCACTGCACAAGGCTGACATCGAGGAGCGCCTGGCCCAGCTGCGCAAGGCATCAGAGAGCGAGCTGGAGCGGCAGAAGGGCTTGGTGGAGGACACCCTGCGACAGCGGCGGCAGGTGGAGGAGGAGATCATGGCGCTGAAGGTGAGCTTTGAGAAAGCCGCCGCGGGCAAGGCAGAGCTGGAGCTGGAGCTGGGGCGCATTCGCAGCAACGCGGAGGACACAATGCGCAGCAAGGAGCAGGCGGAACTGGAGGCGGCCCGGCAGCGGCAGTTGGCGGCAGAGGAGGAGCAGAGGCGCCGGGAGGCCGAGGAGCGCGTGCAGAGGAGCCTGGCAGCGGAGGAGGAAGCCGCTCGGCAGCGCAAGGTGGCACTGGAGGAGGTCGAGCGACTCAAGGCCAAGGTTGAAGAAGCACGGCGCCTGCGAGAGCGGGCAGAGCAGGAGTCGGCCAGGCAGCTGCAGCTGGCCCAGGAGGCCGCCCAGAAACGGCTGCAGGCGGAGGAGAAGGCACACGCCTTTGTGGTGCAGCAGCGAGAGGAGGAGCTGCAGCAGACGCTTCAGCAAGAGCAGAACATGCTGGATCGGCTGCGGAGTGAGGCAGAGGCAGCGAGGCGAGCCGCCGAGGAGGCGGAGGAGGCCCGGGAGCAGGCGGAGCGCGAGGCAGCGCAGTCTCGGAAACAAGTGGAAGAGGCCGAGCGGCTGAAACAGTCAGCAGAGGAGCAGGCTCAGGCCCAGGCTCAGGCGCAGGCGGCCGCAGAGAAGCTGCGCAAGGAAGCGGAGCAGGAGGCGGCGCGTCGGGCCCAGGCAGAGCAGGCAGCGCTGAAACAGAAGCAGGCAGCCGACGCGGAGATGGAGAAGCATAAAAAGTTTGCAGAGCAGACACTCCGGCAGAAGGCCCAGGTAGAGCAGGAGCTGACCACACTGAGGCTGCAGCTAGAGGAGACTGACCACCAGAAGAGCATCCTGGATGAGGAGCTGCAGCGACTAAAGGCCGAGGTAACAGAGGCAGCCCGGCAGCGCAGCCAGGTAGAGGAGGAGCTCTTCTCTGTCCGTGTGCAGATGGAGGAGCTGGGCAAGCTCAAGGCTCGCATTGAAGCTGAAAACCGGGCCCTCATCCTTCGTGACAAGGACAACACACAGCGCTTCCTGGAGGAGGAGGCCGAGAAGATGAAACAGGTGGCCGAGGAAGCGGCACGGTTGAGCGTGGCCGCCCAGGAGGCAGCACGGCTGAGGCAGCTAGCGGAGGAGGACCTGGCGCAGCAGCGGGCCCTGGCAGAGAAGATGCTGAAGGAGAAGATGCAGGCGGTGCAGGAAGCCACGAGGCTCAAGGCCGAGGCTGAGCTGCTGCAGCAGCAGAAGGAGCTTGCCCAGGAGCAGGCCCGGCGGCTGCAGGAGGACAAGGAGCAAATGGCTCAGCAGTTGGTAGAGGAGACACAGGGTTTCCAGAGGACTCTGGAGGCCGAGCGGCAGCGGCAGCTGGAGATGAGCGCGGAGGCCGAGCGCCTCAAGCTGCGCATGGCTGAGATGAGCCGGGCTCAGGCCCGCGCGGAGGAGGACGCCCAGCGCTTCCGGAAGCAGGCTGAAGAGATCGGCGAGAAGCTGCACCGCACTGAACTTGCGACACAGGAGAAGGTGACGTTGGTGCAGACGCTGGAGATCCAGCGACAGCAGAGTGACCACGATGCCGAGCGTCTGAGGGAGGCCATTGCGGAGCTGGAGCGTGAGAAGGAGAAGCTCAAGCAGGAGGCGAAGTTACTGCAGCTCAAGTCGGAGGAG
Seq A exon
GTACCGCCCTCCCTCCTCACAGGCAGAAGGGTGGCCTGGGGGGCGGGGAGGGGCTAGGCTACCCCTGGGCAGTGGGGAGTCACCCTGGTCTCTGTCCTCCCCGAGAGCTGACCCCCTTTCCCATCCCTAACAG
Seq C2 exon
ATGCAGACTGTGCAGCAGGAGCAGATACTGCAGGAGACCCAGGCCCTGCAGAAGAGCTTCCTCTCTGAGAAGGACAGCCTGCTGCAGCGCGAGCGCTTCATCGAGCAGGAGAAGGCCAAGCTGGAGCAGCTCTTCCAGGACGAGGTGGCTAAAGCAAAGCAGCTGCGTGAGGAGCAGCAGCGGCAGCAGCAGCAGATGGAACAGGAAAAGCAGGAGCTGATGGCCAGCATGGAGGAGGCCAGGAGGCGGCAGCGCGAGGCTGAGGAGGGCGTGAGGCGCAAGCAAGAGGAACTGCAGCATCTGGAGCAGCAGCGGCAGCAGCAGGAGAAGCTCCTGGCGGAGGAAAACCAGCGGCTGCGAGAGCGGCTGCAGCGCCTGGAGGAAGAGCACCGCGCTGCCTTGGCTCACTCTGAGATCGCCACCACCCAGGCCGCTTCCACGAAGGCACTGCCCAACGGCCGGGATGCACCCGATGGCCCGTCCGTGGAGGCTGAACCCGAGTACACCTTTGAGGGACTACGTCAGAAGGTGCCGGCCCAGCAGCTACAGGAAGCAGGCATCCTGAGCCAGGAGGAACTGCAGCGTTTGGCACAGGGTCACACCACGGTGGCTGAGCTCACGCAGCGGGAAGATGTGTACCGGTACCTGAAGGGCCGCAGCAGCATTGCAGGACTGTTACTGAAGCCCACCAATGAGAAACTGAGTGTCTACACAGCCCTACAGCGGCAGCTGCTCAGCCCCGGAACAGCTCTGATCTTGCTGGAGGCCCAGGCAGCCTCGGGCTTCCTGCTGGATCCTGTGCGGAATCGGCGGCTGACAGTCAATGAGGCTGTGAAGGAGGGTGTCGTGGGTCCTGAGCTGCACCACAAACTGCTGTCAGCTGAGCGTGCCGTCACCGGCTACAAGGACCCCTATACAGGGGAACAGATCTCGCTCTTCCAGGCCATGAAGAAGGACCTTATTGTCAGGGACCATGGCGTCCGCCTGCTGGAGGCCCAGATCGCCACCGGTGGCATCATTGATCCTGTGCACAGCCACCGTGTGCCTGTGGACGTGGCCTACAAACGTGGCTACTTCGATGAAGAGATGAACCGCATCTTGTCTGACCCAAGCGATGACACCAAGGGCTTCTTCGACCCCAACACCCACGAGAACCTCACTTACCTGCAGCTGCTGGAGCGCTGTGTGGAGGACCCCGAGACCGGCCTGCGCCTCCTGCCACTCACAGATAAGGCTGCCAAGGGTGGCGAGCTGGTGTACACCGATACGGAGGCCCGTGACGTCTTCGAAAAGGCCACCGTGTCTGCACCGTTTGGCAAGTTCCAGGGCAGGACCGTGACCATCTGGGAGATCATCAACTCGGAGTACTTCACGGCGGAACAGCGACGGGACCTGCTGCAGCAGTTCCGCACGGGCCACATCACGGTGGAGAAAATCATCAAAATCGTCATCACAGTGGTGGAGGAACACGAGCGGAAGGGCCAGCTCTGCTTTGAGGGCCTCCGTGCCCTCGTGCCCGCCGCAGAGCTGCTGGACAGTGGGGTCATCAGCCACGAACTCTACCAGCAGCTGCAGCGGGGTGAGCGTTCTGTGCGGGAAGTGGCCGAGGCGGACAGCGTGAGGCAGGCCCTGCGGGGTACCAATGTCATCGCCGGTGTGTGGCTGGAAGAAGCAGGGCAGAAGCTGAGCATCTATGAGGCCCTGAAGAAAGACTTGCTGCAGCCAGAGGTGGCTGTGGCCTTGCTGGAGGCCCAGGCTGGCACTGGGCATATCATCGACCCTGCCACCAGCGCCAGGCTGACTGTGGACGAGGCGGTGCGTGCTGGCCTGGTGGGGCCTGAGCTGCACGAGAAGCTGCTGTCAGCCGAGAAGGCCGTGACAGGCTACAGGGATCCCTACTCAGGACAGAGTGTCTCACTGTTCCAGGCCTTGAAGAAGGGTCTCATCCCCCGAGAACAGGGCCTGCGCCTGCTGGATGCCCAGTTATCCACTGGTGGCATTGTAGACCCCAGCAAAAGCCACCGTGTGCCCCTGGATGTTGCCTATGCCCGGGGCTACCTGGACAAAGAGACTAACAGGGCCCTGACGTCACCCAGAGATGATGCCAGAGTCTACCATGACCCCAGCACCCAGGAGCCAGTCACCTACAGCCAGCTCCAACAGCGGTGCCGGTCTGACCAGCTGACCGGCTTGAGCCTACTGCCACTCTCAGAGAAGGCCGTCCGGGCCCGGCAGGAGGAGGTCTACTCTGAGCTCCAGGCCCGGGAGACACTGGAGCAGGCCAAGGTTGAGGTTCCTGTGGGCAGCTTTAAGGGCAGGGCGATGACTGTGTGGGAGCTCATCAGCTCTGAATACTTTACTGAGGAGCAGCGGCAGGAGTTGCTGCGGCAGTTCCGCACAGGCAAGGTCACCGTGGAGAAGGTCATCAAGATTGTCATCACCATCGTGGAGGAGGTGGAGACTCGGCGGCAGGAGAGACTGTCCTTTAGTGGCCTCCGTGCCCCTGTGCCGGCCAGTGAGCTCCTGGACGCCAAGATCCTCAGCAGAGCTCAGTTTGACCAGCTCAAGGATGGCAAGACATCAGTCAAAGAGCTGTCCGAGGTGGGCTCCGTGCGGACTCTGCTGCAGGGCAGCGGCTGCCTGGCCGGCATCTATCTGGAGGACTCGAAGGAGAAAGTAACCATCTATGAGGCCATGCGCCGGGGCCTCCTCAGACCCAGCACAGCCACGCTCCTGCTGGAGGCCCAGGCAGCCACTGGTTTCCTGGTGGACCCTGTGCGGAACCAACGTCTGTATGTCCATGAGGCTGTCAAGGCGGGCGTAGTGGGCCCTGAACTCCATGAGAAGCTGCTGTCGGCCGAGAAGGCCGTCACTGGCTACAAGGATCCCTACTCGGGCAACACCATCTCGCTGTTCCAGGCCATGAAAAAGGGCCTGGTCCTCAGGGACCATGCCATCCGCCTGCTGGAGGCCCAGGTCGCCACGGGTGGCATCATCGACCCGGTGCACAGCCACCGCCTGCCTGTGGACGTGGCCTACCAGCGTGGCTACTTCGATGAGGAGATGAACCGTGTGCTGGCAGATCCAAGTGATGACACCAAGGGCTTCTTTGACCCCAACACCCACGAGAACCTCACCTACCTGCAGCTGCTGGAGCGCTGTGTGGAGGACCCCGAGACCGGCCTGCGCCTCCTGCCACTCAAAGGGGCAGAGAAGACCGAGGTGGTAGAAACCACACAGGTGTATACTGAGGAGGAGACTCGGAGGGCGTTCGAGGAGACGCAGATTGACATCCCGGGTGGTGGCAGCCACGGTGGCTCCTCCATGTCTCTGTGGGAGGTGATGCAGTCAAACATGATCCCGGAGGATCAGCGTGCCCGGCTCATGGCTGACTTTCAGGCTGGGAGGGTAACCAAGGAACGCATGATCATTATCATCATCGAAATCATCGAGAAGACCGAGATCATCCGCCAGCAGAACCTGGCCTCCTATGACTACGTGCGCCGCCGCCTCACTGCCGAAGACCTGTACGAGGCCCGGATCATCTCCCTTGAGACCTACAACCTCTTCCGGGAAGGCACCAAGAACCTCCGTGAAGTGCTGGAGATGGAATCTGCCTGGCGCTACCTTTACGGCACAGGCGCGGTGGCCGGTGTCTACCTGCCTGGCTCCAGGCAGACGCTAACCATCTACCAGGCCCTTAAGAAGGGGTTGCTGAGTGCCGAGGTGGCCCGCTTATTGCTGGAAGCACAGGCAGCCACGGGCTTCCTGCTGGACCCAGTGAAGGGGGAGCGGCTGACCGTGGATGAGGCTGTGCGGAAGGGCCTGGTAGGCCCCGAGCTGCATGACCGCCTCCTCTCTGCCGAGCGAGCTGTAACTGGTTACCGAGACCCCTACACGGAACAGACCATCTCACTCTTCCAGGCCATGAAGAAGGAGCTGATCCCTGCTGAGGAGGCGCTGAGGCTGCTGGATGCGCAGCTAGCCACAGGAGGCATTGTGGACCCCCGCCTGGGTTTCCACCTCCCTCTGGAGGTGGCTTACCAACGCGGCTACCTCAATAAGGACACGCACGACCAGCTGTCGGAGCCCAGCGAGGTGCGCAGCTACGTGGACCCCTCCACGGATGAGCGGCTCAGCTACACACAGCTGCTCAAGCGTTGCCGCCGTGATGACCCCAGCGGCCAGATGCTGCTGCTGCTCTCTGATGCCCGCAAGCTGACCTTCCGCGGTCTCCGCAAGCAGATCACTGTGGAGGAGCTGGTACGCTCTCAAGTCATGGACGAGGCCACAGCGCTACAGCTACAAGAAGGCCTGACCTCCATCGAGGAGGTCACTAAGAACCTGCAGAAGTTCCTCGAGGGTACCAGCTGCATTGCCGGAGTCTTTGTTGATGCCACCAAGGAACGGCTCTCGGTGTACCAGGCTATGAAGAAGGGCATCATCCGCCCCGGGACAGCCTTTGAGCTCCTGGAAGCACAGGCAGCCACCGGCTATGTCATTGACCCCATCAAGGGACTCAAGCTGACGGTGGAAGAAGCCGTTCGTATGGGTATTGTGGGCCCCGAGTTCAAGGACAAGCTGCTGTCAGCTGAGCGTGCCGTCACTGGCTACAAGGACCCCTACTCTGGGAAACTCATCTCCCTCTTCCAGGCCATGAAGAAGGGCCTGATCCTGAAGGACCATGGCATCCGTCTGCTGGAGGCTCAGATCGCCACTGGGGGCATCATTGACCCCGAGGAGAGCCACCGTTTGCCTGTGGAAGTGGCCTATAAGCGCGGCCTCTTTGATGAGGAGATGAACGAGATCTTGACTGATCCCTCAGATGACACCAAGGGTTTCTTTGACCCCAACACAGAGGAGAACCTCACTTACCTGCAGCTGATGGAGCGCTGCATCACTGACCCCCAGACGGGCCTGTGTCTCCTGCCCCTGAAGGAGAAGAAGCGGGAACGGAAGACATCCTCCAAGTCCTCAGTGCGCAAGCGCCGCGTGGTGATTGTGGACCCAGAGACGGGCAAGGAGATGTCTGTGTACGAGGCCTACCGCAAGGGTCTCATTGACCACCAGACGTACCTGGAGTTGTCGGAGCAGGAGTGTGAGTGGGAAGAGATCACCATCTCCTCCTCAGATGGCGTCGTCAAGTCTATGATCATCGACCGCCGCTCTGGTCGCCAGTATGACATCGACGACGCCATCACCAAGAACCTCATTGACCGCTCAGCACTGGACCAGTACCGCGCTGGTACGCTTTCGATCACTGAGTTTGCTGACATGCTCTCAGGCAATGCCGGTGGCTTCCGTTCCCGCTCCTCCTCTGTGGGCTCATCTTCCTCCTACCCCATCAGTTCTGCTGGCCCCAGGACCCAGCTAGCCTCCTGGTCTGATCCGACTGAGGAGACTGGCCCCGTGGCCGGCATCCTGGACACAGAGACTCTGGAGAAGGTGTCCATCACGGAGGCCATGCACCGCAACCTGGTAGACAACATCACCGGCCAGCGGCTGCTGGAGGCCCAAGCCTGCACCGGGGGCATCATTGACCCCAGCACTGGTGAGCGCTTCCCGGTCACTGAAGCTGTCAACAAGGGCCTGGTGGACAAGATCATGGTAGACCGTATCAATCTGGCCCAGAAGGCCTTCTGTGGGTTTGAGGACCCACGCACCAAGACCAAGATGTCAGCTGCCCAGGCCCTGAAGAAGGGCTGGCTGTACTATGAGGCAGGCCAGCGTTTCCTGGAGGTGCAGTACCTGACCGGTGGTCTGATCGAGCCTGACACGCCCGGCCGTGTGTCTCTCGACGAAGCTCTGCAACGTGGCACTGTGGATGCCCGCACAGCCCAGAAGCTGCGTGATGTCAGTGCTTACTCCAAGTACCTCACGTGCCCCAAGACCAAGCTCAAGATCTCCTACAAGGACGCTCTGGACCGTAGCATGGTGGAGGAGGGCACGGGGCTGAGGCTGCTGGAGGCTGCGGCACAGTCCAGCAAGGGCTACTACAGCCCGTACAGCGTCAGTGGCTCTGGCTCGACCGCCGGCTCACGCACTGGTTCACGCACCGGCTCCAGGGCCGGCTCCCGGCGTGGCAGCTTTGATGCCACTGGCTCTGGCTTCTCCATGACCTTTTCTTCTTCCTCCTACTCTTCCTCAGGCTATGGCCGCCGCTATGCCTCAGGGCCTTCAGCCTCTCTTGGGGGCCCTGAGTCTGCAGTGGCCTGATCCCCTCAGCCTGCATCCTGCCTTCCCGCTCTGCATGTGGCCGGGCTCCCTGTGGAGGCACTGGGGTCTTCTTTTTTTTTTTCTTTTTTTTTCCTTTTTAACATTTAAAGGTGTCTTCCTCCCAAGCGGTGCCTAAAATCTAACCAAAAAGACCAGACTAACACATTAATATATGTATGCGATGTCCAGACAGCCTGTGTCTTGGGGAACAGGGCTGGCCCAGGCCCAGTGACCACTTCAATCTCCTGGGTTCTCCCTAAATCCTTTCTACCTGCCACTCACCACAGCCAGGTGCCTTGGAGAATCCAGAGCTGGGCATTCAGCCTATACCACTCCTGTCTCTCCTGGGAGGATTCTATCTGGGAAAGGCCCCCAGACCTCTAAGCCAACCCCACTGGATGTCTACCTGCTGGTCCTAGCTGCTGAGGGGAACTGGGGACAGTCGTGTGAGCAGACAGCTCTTGAGGCCTCTGTCCTGAGCCAGCTGCTTCTCCCCAGTCTATCTCTGAATGTCCTGTATATTCAGTGGGTTTTGCTGGCCAAGGGAAGATCCCAGGCCAACCATCTCTTCCAGCCTACCCAGAGAAGCCCCTTCCCCATGGGAAGATAAGGCCTGGTCCTGGCCCCAGCCTCCCGCCTGGCTCCTGCAGCTGCCATTGGAGCTATGCTTTGTAGCTCAACACCCCATACTTATTCCCCTGAGACCTGAGCCTCTGCTTCAGCCTTCCAGCCTCAGCTCCCCTTGTAAGTGCCTTCTGTGTCCTTGTACCCAGGCCCTAAAGACCCAGACCCAGGGTAGGAGATGGACATTCTGGCTGGGCGGGGCTGGAGGGTTCTGCAGATCTGAGACTTCTCCTGCTCCAGAGGCCCAGGGACTCTTCAAGCCTGTGGAACCCCTCTCTGGGTGCTGCTGCCCACCTCACTCCCAGGGAGCCCTGGCCCCTCCATGGCCCAGAGACACCGGCTGGCCCATCTATGCTAACAGAAGCATTTGGCCAGTGACACTCTCCCTTCCTTCCTGTCCAGCCAGTCCCGGGCCTTGGTGGCTCCTCCCCTGCCTCCACCCTCTGAGTGAGCTTTGCATGTTCCACTAACCTTGAGCTGGTGGCAGGTGGAGATGCCAGGCAGAACACTAACCTGACCATGGGCGGGGCCCTGCGGTGTCCGCCCCTCAATAAAAGCAATTCCAACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-Plec:NM_001164203:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.7),PF0068115=Plectin=WD(100=1.5),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGCGAAGTTACTGCAG
R:
GCTCCTGCTTTTCCTGTTCCA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: