GgaINT1001567 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P341]
Coordinates
chr7:21631496-21631807:+
Coord C1 exon
chr7:21631496-21631628
Coord A exon
chr7:21631629-21631704
Coord C2 exon
chr7:21631705-21631807
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGTTCCTCCCCCTGTGCAGGTG
3' ss Score
11.12
Exon sequences
Seq C1 exon
GGTGTCGCGCAGCCCCAGCTGCAAGATGGACGTCCTCAACCTGTCCCGTGTCTTCGGCCCCACGCTGGTTGGGCACGGCTCTGCCAACCCCACGCCGCTCGTCATCATGGAGGACACGCCGCGGCAGTGCAAG
Seq A exon
GTGAGCGGAGCACAGGCTGCAGGTGCTGCCACGGGTGCCGCCGGCTCCTCCAGCCTCCGTTCCTCCCCCTGTGCAG
Seq C2 exon
GTGGTGGCTCGGCTCCTGGCACTGCCGTCTGACTTCTGGAGGGGCTTCGTGGGGACAGAACAAGAGAACCCAGCGCCAACACCGGACCCAGGAGGCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011252:ENSGALT00000018359:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(22.8=68.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGACGTCCTCAACCTGT
R:
TCTCTTGTTCTGTCCCCACGA
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]